View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3472_low_14 (Length: 405)

Name: NF3472_low_14
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3472_low_14
NF3472_low_14
[»] chr2 (46 HSPs)
chr2 (6-390)||(38792490-38792873)
chr2 (208-381)||(39136862-39137035)
chr2 (208-368)||(39415700-39415860)
chr2 (252-378)||(39222551-39222677)
chr2 (196-324)||(39390555-39390683)
chr2 (221-381)||(39390078-39390238)
chr2 (190-323)||(38792925-38793058)
chr2 (166-307)||(38792388-38792531)
chr2 (218-365)||(39415451-39415598)
chr2 (207-311)||(39221666-39221770)
chr2 (301-381)||(39221928-39222008)
chr2 (301-381)||(39222138-39222218)
chr2 (190-324)||(38793178-38793312)
chr2 (84-313)||(38792446-38792658)
chr2 (190-330)||(39389709-39389849)
chr2 (79-159)||(39415519-39415599)
chr2 (252-356)||(39603192-39603296)
chr2 (196-347)||(39451686-39451837)
chr2 (238-324)||(39390345-39390431)
chr2 (190-308)||(39415250-39415368)
chr2 (166-330)||(39473898-39474062)
chr2 (166-324)||(39136568-39136726)
chr2 (172-262)||(39422178-39422268)
chr2 (171-320)||(39152190-39152339)
chr2 (201-330)||(39222290-39222419)
chr2 (178-271)||(39415161-39415254)
chr2 (200-311)||(39192611-39192722)
chr2 (200-311)||(39198291-39198402)
chr2 (263-330)||(39602993-39603060)
chr2 (2-68)||(38792607-38792673)
chr2 (238-347)||(39137303-39137412)
chr2 (196-304)||(39451434-39451542)
chr2 (85-156)||(39136877-39136948)
chr2 (92-155)||(39192629-39192692)
chr2 (209-324)||(39192850-39192965)
chr2 (92-155)||(39198309-39198372)
chr2 (209-324)||(39198530-39198645)
chr2 (333-390)||(39389901-39389958)
chr2 (190-299)||(39391033-39391142)
chr2 (92-156)||(39221689-39221753)
chr2 (92-156)||(39390585-39390649)
chr2 (305-368)||(39192680-39192743)
chr2 (305-368)||(39198360-39198423)
chr2 (171-236)||(39458543-39458608)
chr2 (275-379)||(39222238-39222342)
chr2 (85-177)||(39415753-39415845)
[»] chr7 (3 HSPs)
chr7 (208-347)||(19807223-19807362)
chr7 (166-324)||(19806929-19807087)
chr7 (85-156)||(19807238-19807309)
[»] chr5 (3 HSPs)
chr5 (202-324)||(17059194-17059316)
chr5 (293-381)||(33560511-33560599)
chr5 (189-299)||(33560281-33560391)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 6 - 390
Target Start/End: Original strand, 38792490 - 38792873
Alignment:
Q  6 aggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctggtgactgattttggtattaaatcagaacgaaggaacttgaggcaacagag 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||    
T  38792490 aggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctggtgactgattt-ggtattaaatcagaacgaaggaacttgagtcgaaagag 38792588  T
Q  106 aagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaatgattttgtattgaaacagaagc 205  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792589 aagcaacatgaaggccaggtggaggagcatgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaatgattttgtattgaaacagaagc 38792688  T
Q  206 tttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagt 305  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792689 ttttcgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagt 38792788  T
Q  306 gaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcgaaatg 390  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38792789 gaaggaccaggaatctaaacagaaattgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcaaaatg 38792873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 208 - 381
Target Start/End: Original strand, 39136862 - 39137035
Alignment:
Q  208 tttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 307  Q
    ||||| |||||||| ||||| |||||||| ||||| |||||  |||||||||||||||||||||| | |||||||||||||||||||||| | |||||||    
T  39136862 tttgagaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaaagccaagtga 39136961  T
Q  308 aggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 381  Q
     ||||||| ||| |||| ||||  |||||||||  ||||| |||| ||| ||||||||||| ||||||||||||    
T  39136962 tggagcagcaatttaaaaagaaactgtttgaaatccaagtcaaggcgttagagtcaaaagaaaaccaacttgta 39137035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 208 - 368
Target Start/End: Complemental strand, 39415860 - 39415700
Alignment:
Q  208 tttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 307  Q
    |||||||||||||| ||||| ||||| || ||||| |||||  |||||||||||||||| ||||| | |||||||||||||||||||||||| || ||||    
T  39415860 tttgaaaaccgaatcaaggagcttgaatcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaaggccaggtga 39415761  T
Q  308 aggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaaga 368  Q
    |||||| | |||||||| ||||| |||||||||  ||||| |||||||| |||||||||||    
T  39415760 aggagctgaaatctaaaaagaagctgtttgaaatccaagtcaaggagttagagtcaaaaga 39415700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 252 - 378
Target Start/End: Original strand, 39222551 - 39222677
Alignment:
Q  252 tgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaag 351  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||  |||||||||||||| | |||||||| |||||  | ||||||| |||||||||    
T  39222551 tgaaggccgaatgaaggagcatgaatcaaaagagagagaatttgaaattcaagtgaaggagctgcaatctaaaaagaagcaggttgaaagccaagttaag 39222650  T
Q  352 gagttggagtcaaaagataaccaactt 378  Q
    ||||| |||||||||||||||||||||    
T  39222651 gagttagagtcaaaagataaccaactt 39222677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 39390683 - 39390555
Alignment:
Q  196 aaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttg 295  Q
    |||||||||| |||||||| || |||||||||  ||||||| ||||| |||||| ||||| |||| ||||||||||| ||||||||||||||||||||||    
T  39390683 aaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttg 39390584  T
Q  296 aaggtcaagtgaaggagcaggaatctaaa 324  Q
    |||| ||| ||||||| | ||||||||||    
T  39390583 aaggccaaatgaaggaactggaatctaaa 39390555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 221 - 381
Target Start/End: Complemental strand, 39390238 - 39390078
Alignment:
Q  221 tgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatc 320  Q
    |||||||  ||||||| ||||| |||||| ||||| |||| ||||||||||| ||||| ||||||||||| |||||||| ||| ||||||| | ||||||    
T  39390238 tgaaggattttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatccaaagagagagattttgaaggccaaatgaaggaactggaatc 39390139  T
Q  321 taaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 381  Q
    |||| |||||  | | ||||| |||||||||||||| ||||| |||| |||| ||||||||    
T  39390138 taaaaagaagcaggtcgaaagccaagttaaggagttagagtctaaaggtaacgaacttgta 39390078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 323
Target Start/End: Original strand, 38792925 - 38793058
Alignment:
Q  190 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 289  Q
    |||||||||||||||| ||| |||| || ||||||||| ||||||| |||||| || ||| |||||| |||| |||||||||| || |||||  || |||    
T  38792925 gtattgaaacagaagcatttcgaaagccaaatgaaggaacttgagttgaaagagaaccaaaatgaagaccggatgaaggagcatgactcaaagaagcgag 38793024  T
Q  290 aatttgaaggtcaagtgaaggagcaggaatctaa 323  Q
    ||||||||||||||||||||||||  ||||||||    
T  38793025 aatttgaaggtcaagtgaaggagctagaatctaa 38793058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 38792388 - 38792531
Alignment:
Q  166 gtgacggagctggtgaatgattt--tgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggt 263  Q
    |||| ||||||||||||||||||  ||| |||| ||| ||||  ||||| | | ||||||||||||||||||  ||||| |||||  ||||||| |||||    
T  38792388 gtgaaggagctggtgaatgatttggtgtgttgagacaaaagcagtttgagagcggaatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggt 38792487  T
Q  264 gaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 307  Q
    ||||||||| |||||||||  |||||||||||||||||||||||    
T  38792488 gaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtga 38792531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 218 - 365
Target Start/End: Complemental strand, 39415598 - 39415451
Alignment:
Q  218 gaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcagga 317  Q
    |||||||||| |||||| | ||||| |||||| ||||||| |  |||||||||   ||||||||||||||||||||| || | ||||||| ||||| |||    
T  39415598 gaatgaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaaagagagagaatttaaaagccaagtgagggagctgga 39415499  T
Q  318 atctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaa 365  Q
    ||||||| |||||   |||||||| ||||| |||||||||||||||||    
T  39415498 atctaaaaagaagcaatttgaaagacaagtaaaggagttggagtcaaa 39415451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 311
Target Start/End: Original strand, 39221666 - 39221770
Alignment:
Q  207 ttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtg 306  Q
    |||||||| ||  ||||||||  ||||||| ||||| |||||| |||||||| ||||||||||||| | |||||||||||||||||||||||| ||| ||    
T  39221666 ttttgaaagccagatgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaatttgaaggccaaatg 39221765  T
Q  307 aagga 311  Q
    |||||    
T  39221766 aagga 39221770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 39221928 - 39222008
Alignment:
Q  301 caagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 381  Q
    ||||||||||||| |||||||||| ||||| |||||||||| ||||| ||||||||  |||||||||||||||||||||||    
T  39221928 caagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataaccaacttgta 39222008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 39222138 - 39222218
Alignment:
Q  301 caagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 381  Q
    ||||||||||||| |||||||||| ||||| |||||||||| ||||| ||||||||  |||||||||||||||||||||||    
T  39222138 caagtgaaggagctggaatctaaaaagaagctgtttgaaagccaagtgaaggagttaaagtcaaaagataaccaacttgta 39222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 324
Target Start/End: Original strand, 38793178 - 38793312
Alignment:
Q  190 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 289  Q
    ||||||||| |||||  |||||||| ||| ||||||   |||||||  ||||| |||||| ||||||| |||||||||||||| |||| |||||  ||||    
T  38793178 gtattgaaaaagaagtgttttgaaagccggatgaagatgcttgagttaaaagagaagcaacatgaaggtcgggtgaaggagcatgaattaaaagctagag 38793277  T
Q  290 aatttgaaggtcaagtgaaggagcaggaatctaaa 324  Q
    ||||||||||| ||||| |||||| ||| ||||||    
T  38793278 aatttgaaggtaaagtggaggagctggagtctaaa 38793312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 313
Target Start/End: Original strand, 38792446 - 38792658
Alignment:
Q  84 gaaggaacttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaat 183  Q
    |||||| ||||||  || ||||||||| |||||||| | |||| |||||| ||||||||||| |||||||||| ||| ||| ||||  |||||||||| |    
T  38792446 gaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctggtgact 38792545  T
Q  184 gattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaag 283  Q
    ||||| |||||                 ||| | ||| |||||| |||||||||||||| |||||| ||||||||| |||| ||||||| |||||||||     
T  38792546 gatttggtatt-----------------aaatcagaacgaaggaacttgagtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaaaa 38792628  T
Q  284 agagagaatttgaaggtcaagtgaaggagc 313  Q
    ||||||||||| ||| ||| |||| |||||    
T  38792629 agagagaatttaaagatcatgtgacggagc 38792658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 39389849 - 39389709
Alignment:
Q  190 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 289  Q
    |||||||||||||||| || | ||| || ||||||||| |||||||| ||||  ||||||  ||||| ||   || ||||||| |||||||| ||||  |    
T  39389849 gtattgaaacagaagcattataaaagccaaatgaaggagcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcatgaatcaaaggagaagg 39389750  T
Q  290 aatttgaaggtcaagtgaaggagcaggaatctaaacagaag 330  Q
    ||||||||||||||| |||||||| |||||||||| |||||    
T  39389749 aatttgaaggtcaagcgaaggagctggaatctaaaaagaag 39389709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 39415599 - 39415519
Alignment:
Q  79 agaacgaaggaacttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaatttaaa 159  Q
    |||| |||||| |||||||||| |||||||||||||||||| || ||| ||||| ||||||||||| ||||||||||||||    
T  39415599 agaatgaaggagcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaaagagagagaatttaaa 39415519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 39603192 - 39603296
Alignment:
Q  252 tgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaag 351  Q
    ||||||||| | ||||||||| ||||||||||||||||||||||||  ||||| |||||||| |||||||||| |||||   |||||||| |||||  ||    
T  39603192 tgaaggccgagcgaaggagcatgaatcaaaagagagagaatttgaaattcaagcgaaggagctggaatctaaaaagaagcattttgaaagccaagtggag 39603291  T
Q  352 gagtt 356  Q
    |||||    
T  39603292 gagtt 39603296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 196 - 347
Target Start/End: Original strand, 39451686 - 39451837
Alignment:
Q  196 aaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttg 295  Q
    |||||||| | || ||||| ||| ||| |||||||||| |  || || | |||| |||| |||||||||| |||||| |||||||||| |||||||||||    
T  39451686 aaacagaaacattatgaaagccggatggaggaccttgacttaaatgagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagagaatttg 39451785  T
Q  296 aaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagt 347  Q
    ||||  |||||||||| | |||||||||| |||||   |||||||| |||||    
T  39451786 aaggcaaagtgaaggatctggaatctaaaaagaagcattttgaaagccaagt 39451837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 324
Target Start/End: Complemental strand, 39390431 - 39390345
Alignment:
Q  238 aaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaa 324  Q
    ||||| |||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||| ||| ||||||| | ||||||||||    
T  39390431 aaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaa 39390345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 39415368 - 39415250
Alignment:
Q  190 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 289  Q
    |||||||||||||||| ||| |||| || | |||| || ||||||||||||| ||||||| |||||| |||  |||||||||| ||||  || |||||||    
T  39415368 gtattgaaacagaagcatttagaaagccaagtgaaagagcttgagtcgaaagcaaagcaagatgaagtccgattgaaggagcatgaattgaacgagagag 39415269  T
Q  290 aatttgaaggtcaagtgaa 308  Q
    || || |||||||||||||    
T  39415268 aacttaaaggtcaagtgaa 39415250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 330
Target Start/End: Complemental strand, 39474062 - 39473898
Alignment:
Q  166 gtgacggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 265  Q
    |||| |||||| ||||||||||| ||||  |||||||||| |||||||| ||| ||| || | ||| |||| ||||| |||||   ||| ||||| |||     
T  39474062 gtgaaggagctagtgaatgatttggtatcaaaacagaagcattttgaaagccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtgg 39473963  T
Q  266 aggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaag 330  Q
    |||||||  |||||||| |||||||||||||| | || ||||||| ||  ||||||||| |||||    
T  39473962 aggagcataaatcaaaacagagagaatttgaaagccaggtgaaggggctagaatctaaaaagaag 39473898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 39136568 - 39136726
Alignment:
Q  166 gtgacggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 265  Q
    |||| |||||||||||||||||| ||||  |||||||||| ||| |||| ||  || ||||| |||||||||||||| | ||||  |||||||||  |||    
T  39136568 gtgaaggagctggtgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattga 39136667  T
Q  266 aggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaa 324  Q
    ||||||| ||||   |||| | |||||||||||| |   |||| |||| ||||||||||    
T  39136668 aggagcatgaattggaagaaaaagaatttgaaggccggatgaatgagctggaatctaaa 39136726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 39422268 - 39422178
Alignment:
Q  172 gagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccggg 262  Q
    ||||||| ||||||||| ||||  ||||||||||  ||||||| ||||||||||||||||||||| ||||| ||||||  ||| |||||||    
T  39422268 gagctggagaatgatttggtatcaaaacagaagcaatttgaaagccgaatgaaggaccttgagtctaaagagaagcaacttgatggccggg 39422178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 320
Target Start/End: Original strand, 39152190 - 39152339
Alignment:
Q  171 ggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggag 270  Q
    |||||||||||||||||| ||||  |||||||||| |||||||| ||| || ||||| |||||||| ||||| || |||  ||| || || ||||||| |    
T  39152190 ggagctggtgaatgatttggtatccaaacagaagcattttgaaagccggattaaggaacttgagtctaaagagaaacaacttgatggacgagtgaagggg 39152289  T
Q  271 cacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatc 320  Q
       ||||||||||||   ||||||||||| || |||||| ||| ||||||    
T  39152290 tttgaatcaaaagaggatgaatttgaaggccaggtgaagaagctggaatc 39152339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 330
Target Start/End: Original strand, 39222290 - 39222419
Alignment:
Q  201 gaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggt 300  Q
    ||||| ||| |||| || |||||||||  ||||||| ||||| ||||||  ||||||||  |||||||||||  ||||||||||||||| ||| |||||     
T  39222290 gaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggc 39222389  T
Q  301 caagtgaaggagcaggaatctaaacagaag 330  Q
    ||| ||||||| | |||||| ||| |||||    
T  39222390 caactgaaggaactggaatccaaaaagaag 39222419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 271
Target Start/End: Complemental strand, 39415254 - 39415161
Alignment:
Q  178 gtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagc 271  Q
    ||||||||||| ||||  |||| ||| | |||||||| |||||||||||| |||||||| ||||| |||||| ||||||| || ||||||||||    
T  39415254 gtgaatgatttggtatcaaaactgaatcattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 39192722 - 39192611
Alignment:
Q  200 agaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaagg 299  Q
    ||||||| ||||||  || | |||||||  ||||||| ||||| |||||  |||||| ||  ||||||||||  |||||||||||||||||||| |||||    
T  39192722 agaagctatttgaatgccaagtgaaggagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaagg 39192623  T
Q  300 tcaagtgaagga 311  Q
     |||||||||||    
T  39192622 ccaagtgaagga 39192611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 311
Target Start/End: Complemental strand, 39198402 - 39198291
Alignment:
Q  200 agaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaagg 299  Q
    ||||||| ||||||  || | |||||||  ||||||| ||||| |||||  |||||| ||  ||||||||||  |||||||||||||||||||| |||||    
T  39198402 agaagctatttgaatgccaagtgaaggagtttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaagg 39198303  T
Q  300 tcaagtgaagga 311  Q
     |||||||||||    
T  39198302 ccaagtgaagga 39198291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 39602993 - 39603060
Alignment:
Q  263 tgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaag 330  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||||| ||||| |||||||||| |||||    
T  39602993 tgaaggagcatgaatcaaaagaaagagagtttgaaggccaagtgacggagctggaatctaaaaagaag 39603060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 38792607 - 38792673
Alignment:
Q  2 gtggaggagcatgaatcaaaaacgagagaatttgaaggtcaagtgatagagctggtgactgattttg 68  Q
    |||||||||||||||||||||| |||||||||| ||| ||| ||||  |||||||||| ||||||||    
T  38792607 gtggaggagcatgaatcaaaaaagagagaatttaaagatcatgtgacggagctggtgaatgattttg 38792673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 347
Target Start/End: Original strand, 39137303 - 39137412
Alignment:
Q  238 aaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttg 337  Q
    ||||| || ||| ||||||||||||||| |||||| |||||||||| |||||||||||||| | || ||| ||| |  |||||||||  ||||  |||||    
T  39137303 aaagagaaacaacatgaaggccgggtgatggagcatgaatcaaaagtgagagaatttgaagttaaaatgatggatctagaatctaaaatgaagcagtttg 39137402  T
Q  338 aaaggcaagt 347  Q
    |||| |||||    
T  39137403 aaagccaagt 39137412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 304
Target Start/End: Original strand, 39451434 - 39451542
Alignment:
Q  196 aaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttg 295  Q
    |||||||| | || ||||| ||| ||| |||||||||| || || || ||||||  |||| ||||| |||||||||| ||||||||||| ||||| ||||    
T  39451434 aaacagaaacattatgaaagccggatggaggaccttgactcaaatgagaagcaacttgaaagccggttgaaggagcatgaatcaaaagaaagagagtttg 39451533  T
Q  296 aaggtcaag 304  Q
    |||| ||||    
T  39451534 aaggccaag 39451542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 39136877 - 39136948
Alignment:
Q  85 aaggaacttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaattt 156  Q
    ||||| |||||| ||| ||||||||| |||||||||| |||| |||||| || ||||||| |||||||||||    
T  39136877 aaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaattt 39136948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 39192692 - 39192629
Alignment:
Q  92 ttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaatt 155  Q
    ||||| ||| ||||||||| ||||||| ||| ||| ||||||||||||||||| ||||||||||    
T  39192692 ttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaatt 39192629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 324
Target Start/End: Complemental strand, 39192965 - 39192850
Alignment:
Q  209 ttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaa 308  Q
    |||||| || ||||||||| |||||||| || || | |||| ||||||| ||||||||| ||   |||||||||||||  ||||| ||||| | |||| |    
T  39192965 ttgaaagccaaatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaagagacggaattggaaggccgagtgca 39192866  T
Q  309 ggagcaggaatctaaa 324  Q
    ||||| ||||||||||    
T  39192865 ggagctggaatctaaa 39192850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 39198372 - 39198309
Alignment:
Q  92 ttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaatt 155  Q
    ||||| ||| ||||||||| ||||||| ||| ||| ||||||||||||||||| ||||||||||    
T  39198372 ttgagtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaatt 39198309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 324
Target Start/End: Complemental strand, 39198645 - 39198530
Alignment:
Q  209 ttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtgaa 308  Q
    |||||| || ||||||||| |||||||| || || | |||| ||||||| ||||||||| ||   |||||||||||||  ||||| ||||| | |||| |    
T  39198645 ttgaaagccaaatgaaggagcttgagtcaaacgagatgcaacatgaaggtcgggtgaagaagtttgaatcaaaagagacggaattggaaggccgagtgca 39198546  T
Q  309 ggagcaggaatctaaa 324  Q
    ||||| ||||||||||    
T  39198545 ggagctggaatctaaa 39198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 39389958 - 39389901
Alignment:
Q  333 gtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgtacgcgaaatg 390  Q
    ||||||| | ||||| |||||||| |||||||||||||||||||||||| || |||||    
T  39389958 gtttgaaggccaagtgaaggagttagagtcaaaagataaccaacttgtaggcaaaatg 39389901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 299
Target Start/End: Complemental strand, 39391142 - 39391033
Alignment:
Q  190 gtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagag 289  Q
    |||||||| ||||||| || ||||| || ||||||||| |||||||| ||||| || |||  ||||||||   |||||||||| |||| ||| ||||  |    
T  39391142 gtattgaagcagaagcattgtgaaagccaaatgaaggagcttgagtccaaagagaaacaacttgaaggccaattgaaggagcatgaattaaaggagaagg 39391043  T
Q  290 aatttgaagg 299  Q
    ||||||||||    
T  39391042 aatttgaagg 39391033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Original strand, 39221689 - 39221753
Alignment:
Q  92 ttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaattt 156  Q
    ||||| ||| |||||||||||||||||||  |||| |||||| || ||||||| |||||||||||    
T  39221689 ttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaattt 39221753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 39390649 - 39390585
Alignment:
Q  92 ttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaattt 156  Q
    ||||| ||| |||||||||||||||| |||  ||| |||||| |||||||||| |||||||||||    
T  39390649 ttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaattt 39390585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 39192743 - 39192680
Alignment:
Q  305 tgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaaga 368  Q
    ||||||||| |||||||||| ||||| | |||||| | ||||| |||||||| |||||||||||    
T  39192743 tgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaaga 39192680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 39198423 - 39198360
Alignment:
Q  305 tgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaaga 368  Q
    ||||||||| |||||||||| ||||| | |||||| | ||||| |||||||| |||||||||||    
T  39198423 tgaaggagctggaatctaaaaagaagctatttgaatgccaagtgaaggagtttgagtcaaaaga 39198360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 39458543 - 39458608
Alignment:
Q  171 ggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtc 236  Q
    |||||| |||||||||||  |||  |||||||||| ||| |||| |||||||||||| ||||||||    
T  39458543 ggagctagtgaatgatttgatatcaaaacagaagcatttcgaaagccgaatgaaggagcttgagtc 39458608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 379
Target Start/End: Original strand, 39222238 - 39222342
Alignment:
Q  275 aatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataacca 374  Q
    ||||||||||||| ||||||||||| || | |||| ||| ||||||||||  ||||   || ||||| ||| | |||||||| ||||| ||||| || ||    
T  39222238 aatcaaaagagagggaatttgaaggccaggcgaagcagctggaatctaaaaggaagcatttcgaaagccaaatgaaggagtttgagtctaaagagaagca 39222337  T
Q  375 acttg 379  Q
    |||||    
T  39222338 acttg 39222342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 177
Target Start/End: Complemental strand, 39415845 - 39415753
Alignment:
Q  85 aaggaacttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaatttaaagatcatgtgacggagctg 177  Q
    ||||| |||||  ||| ||||||||| |||||||||| |||| | |||| || ||||||| ||||||||||| |||  || |||| |||||||    
T  39415845 aaggagcttgaatcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaaggccaggtgaaggagctg 39415753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 347
Target Start/End: Original strand, 19807223 - 19807362
Alignment:
Q  208 tttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtcaagtga 307  Q
    |||||||||||||| ||||| |||||||| ||||| |||||  ||||||||||| |||||||||| | |||||||||||||||||||||| | ||| |||    
T  19807223 tttgaaaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaaagccaaatga 19807322  T
Q  308 aggagcaggaatctaaacagaagttgtttgaaaggcaagt 347  Q
     ||||||| |||||||| ||||| |||||||||| |||||    
T  19807323 tggagcagcaatctaaaaagaagctgtttgaaagccaagt 19807362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 324
Target Start/End: Original strand, 19806929 - 19807087
Alignment:
Q  166 gtgacggagctggtgaatgattttgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtga 265  Q
    |||| ||||||| |||||||||| ||||  |||||||||| ||| |||| ||  || ||||| |||||||||||||| | ||||  |||||||||  |||    
T  19806929 gtgaaggagctgatgaatgatttggtatcaaaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattga 19807028  T
Q  266 aggagcacgaatcaaaagagagagaatttgaaggtcaagtgaaggagcaggaatctaaa 324  Q
    ||||||| |||||| ||||   |||||||||||| | |||||| |||| ||||||||||    
T  19807029 aggagcatgaatcagaagaacaagaatttgaaggccgagtgaatgagctggaatctaaa 19807087  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 19807238 - 19807309
Alignment:
Q  85 aaggaacttgaggcaacagagaagcaacatgaaggccaggtggaggagcgtgaatcaaaaaagagagaattt 156  Q
    ||||| |||||| ||| ||||||||| |||||||||| | || |||||| || ||||||| |||||||||||    
T  19807238 aaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaattt 19807309  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 17059194 - 17059316
Alignment:
Q  202 aagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagagagaatttgaaggtc 301  Q
    |||| ||| |||| |||||||||||| ||||  || ||||| || ||| ||||||  | ||||| ||||||| ||||||||||||| ||||||||||| |    
T  17059194 aagcatttcgaaagccgaatgaaggagcttgcatcaaaagagaaacaacatgaagcactggtgatggagcacaaatcaaaagagagtgaatttgaaggcc 17059293  T
Q  302 aagtgaaggagcaggaatctaaa 324  Q
     ||||||||||| ||||||||||    
T  17059294 tagtgaaggagctggaatctaaa 17059316  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 33560511 - 33560599
Alignment:
Q  293 ttgaaggtcaagtgaaggagcaggaatctaaacagaagttgtttgaaaggcaagttaaggagttggagtcaaaagataaccaacttgta 381  Q
    |||| ||||| |||||||||| |||||||||| ||||    |||||||| |||||||||||||| ||||||||||| |  |||||||||    
T  33560511 ttgatggtcaggtgaaggagctggaatctaaaaagaaccactttgaaagacaagttaaggagtttgagtcaaaagagagtcaacttgta 33560599  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 33560281 - 33560391
Alignment:
Q  189 tgtattgaaacagaagctttttgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagaga 288  Q
    ||||||||||||| ||| ||  |||| || ||||||||| ||| |||| ||||| ||||||  |||||||||  |||| ||||| || ||||| ||||      
T  33560281 tgtattgaaacaggagcattgagaaagccaaatgaaggagcttcagtcaaaagagaagcaacttgaaggccgattgaatgagcatgagtcaaaggagaag 33560380  T
Q  289 gaatttgaagg 299  Q
    |||||||||||    
T  33560381 gaatttgaagg 33560391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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