View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_15 (Length: 381)
Name: NF3472_low_15
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 152 - 371
Target Start/End: Complemental strand, 23408093 - 23407874
Alignment:
| Q |
152 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctgtaagcacaaacacatctgatacaaaatatatacatgaaagttc |
251 |
Q |
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| T |
23408093 |
tattattttgtaatttgactgagaattagaatttgataagcttatatcctttgtctttaagcacaaacacatctgatacaaaatatatacatgaaagttc |
23407994 |
T |
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| Q |
252 |
agaggtgagcttagaaggaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
351 |
Q |
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| T |
23407993 |
agaggtgagcttagaaagaaagatacatggtgtgtgtttgattctatatccagctaatgctaatatatgaacacattgttcaaactagtaaatttgttct |
23407894 |
T |
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| Q |
352 |
tggaattggttcttctctgc |
371 |
Q |
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| T |
23407893 |
tggtattggttcttctctgc |
23407874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 23408326 - 23408192
Alignment:
| Q |
8 |
tgtggattgtgattgtttataattaatcaattttattgacactgtaatttgatcttggcttagatgcaaaattaaggatgttttttgctgtaattctgca |
107 |
Q |
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| T |
23408326 |
tgtgggttgtgattgtttataattaatcaattttactgacactgtaatttgatcttggctgagatgcaaaattaaggatgttttttgctgtaattgtgca |
23408227 |
T |
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| Q |
108 |
gaagatatctgctatatgtttaattataagtggac |
142 |
Q |
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| T |
23408226 |
gaagatatctgctatatgtttaattataagtggac |
23408192 |
T |
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