View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_18 (Length: 354)
Name: NF3472_low_18
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 4358196 - 4357913
Alignment:
| Q |
17 |
aatatcacttgagttgaaacttgaaatacatctttgacattactaatttaatacattttagtcggatatcaatagaggacagacttggtttgcaatt--- |
113 |
Q |
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| T |
4358196 |
aatatcacttgagttgaaacttgaaatacatctttgacgttactaatttaatacattttagtcggatatcaatagaggacagacttggtttgcaattaat |
4358097 |
T |
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| Q |
114 |
--------tcacacactattttattacacctaaaaataaagtacatgctagtcaaaattgacaaacatgtgatttaggcttatacatattcttctaagtc |
205 |
Q |
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| T |
4358096 |
ttgcaatttcacacactattttattacacctaaaaataaagtacatgctagtcaaaatcgacaaacatgtgatttaggcttatacatgttcttctaagtc |
4357997 |
T |
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| Q |
206 |
gatgacagattagaagaactcaaaggcttaatgagagaagattaatttatgtaggacacatagtttttgttagtagaactaatg |
289 |
Q |
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| T |
4357996 |
gatgacagattagaagaactcaaaggcttaatgagagaagattaatttatgtaggacacatagtttttgtttgtagaactaatg |
4357913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 4357820 - 4357765
Alignment:
| Q |
285 |
taatgattgggacgcgatatgtacgacaccgtatacttttatctctatctttctatcc |
342 |
Q |
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| T |
4357820 |
taatgattgggacacgat--gtatgacaccgtatactttaatctctatctttctatcc |
4357765 |
T |
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