View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_19 (Length: 346)
Name: NF3472_low_19
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 49016228 - 49016538
Alignment:
| Q |
19 |
atgctgtgaatttcgacatcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgtt |
118 |
Q |
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| T |
49016228 |
atgctgtggatttcgacatcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgtt |
49016327 |
T |
|
| Q |
119 |
caaatatggagggttaccgcattgggggaaaaatagaaacttaggatttgtgggagcaatccataagtataagaaagcaggtaagtttttgaaggttaaa |
218 |
Q |
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| T |
49016328 |
caaatatggagggttaccacattgggggaaaaatagaaacttaggatttgtgggagcaatccgtaagtataagaaagcaggtaagtttttgaaggttaaa |
49016427 |
T |
|
| Q |
219 |
gaagagtatgattcacgaggtcttttctctagtgagtggacaaaccaagtgcttggacttaaagaaggggtgacaatattaaaagatggatgtgcattgg |
318 |
Q |
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| T |
49016428 |
gaagagtatgattcacgaggtcttttctctagtgagtggacaaaccaagtgcttggacttaaagaaggggtgacaatattaaaagatggatgtgcattgg |
49016527 |
T |
|
| Q |
319 |
aagggttgtgt |
329 |
Q |
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| T |
49016528 |
aagggttgtgt |
49016538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 490527 - 490216
Alignment:
| Q |
18 |
gatgctgtgaatttcgacatcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgt |
117 |
Q |
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| T |
490527 |
gatgctgtggaatttgacatcatatattaccgcagtaaagatccattgactcctaggctttatgaagatataattgaagagatagaacaaataggattgt |
490428 |
T |
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| Q |
118 |
tcaaatatggagggttaccgcattgggggaaaaatagaaacttaggatttgtgggagcaatccataagtataagaaagcaggtaagtttttgaaggttaa |
217 |
Q |
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| T |
490427 |
tcaaatatggagggttaccccattggggaaaaaatagaaatataggatttgtgggggcaataaaaaaatataataaggcaaataggtttttgaaggttaa |
490328 |
T |
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| Q |
218 |
agaagagtatgattc-acgaggtcttttctctagtgagtggacaaaccaagtgcttggacttaaagaaggggtgacaatattaaaagatggatgtgcatt |
316 |
Q |
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| T |
490327 |
aaagaaatatgacccgaaga-gacttttctctagtgattggacagaccaagtgcttggacttaaagaaggggtgacaatattaaaagatggatgtgcatt |
490229 |
T |
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| Q |
317 |
ggaagggttgtgt |
329 |
Q |
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| T |
490228 |
ggaagggttgtgt |
490216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 36 - 329
Target Start/End: Original strand, 9071948 - 9072241
Alignment:
| Q |
36 |
atcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttac |
135 |
Q |
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||||||||||| ||||| ||||||||| || |||||||||||| ||||||||| |||||||||| ||||||||||| | ||||| ||||||||||||| |
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| T |
9071948 |
atcacatattatcgtagcaaagatccaatggctcctaggctttatgaagacattcttgaagagattgaacaaattggaattttcaagtatggagggttac |
9072047 |
T |
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| Q |
136 |
cgcattgggggaaaaatagaaacttaggatttgtgggagcaatccataagtataagaaagcaggtaagtttttgaaggttaaagaagagtatgattcacg |
235 |
Q |
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| T |
9072048 |
ctcattggggtaagaatagaaatgtggcatttgaaggagttttcaaaaagtacaaagatattgagaaatttttgaaggttaaagagaaatatgattcaca |
9072147 |
T |
|
| Q |
236 |
aggtcttttctctagtgagtggacaaaccaagtgcttggacttaaagaaggggtgacaatattaaaagatggatgtgcattggaagggttgtgt |
329 |
Q |
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||| |||||||||||| ||||| | |||||||||||| | |||||||| ||||||||||| ||| |||| |||||||| ||||| |||||| |
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| T |
9072148 |
aggacttttctctagtacatggacggatcaagtgcttggaataaaagaaggtgtgacaatattgaaaaatgggtgtgcattagaaggtttgtgt |
9072241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 9059233 - 9059350
Alignment:
| Q |
37 |
tcacatattaccgtagtaaagatccattgactcctaggctttttgaagacataattgaagagatagaacaaattgggttgttcaaatatggagggttacc |
136 |
Q |
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|||| ||||||||||| ||||||||| ||||||||||||||| ||||||| | |||||||||| || ||||| ||| | || |||||||||||||| || |
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| T |
9059233 |
tcacgtattaccgtagcaaagatccaatgactcctaggctttatgaagacgtttttgaagagattgagcaaatagggatttttaaatatggagggttgcc |
9059332 |
T |
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| Q |
137 |
gcattgggggaaaaatag |
154 |
Q |
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| T |
9059333 |
tcattgggggaagaatag |
9059350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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