View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_2 (Length: 644)
Name: NF3472_low_2
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Original strand, 2489655 - 2490255
Alignment:
| Q |
19 |
gaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489655 |
gaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctac |
2489754 |
T |
|
| Q |
119 |
catcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggtt |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489755 |
catcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggtt |
2489854 |
T |
|
| Q |
219 |
gacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489855 |
gacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaat |
2489954 |
T |
|
| Q |
319 |
cagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagttcta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2489955 |
cagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggtacctctactagttcga |
2490054 |
T |
|
| Q |
419 |
catgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgctattagttcaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2490055 |
catgtacaatgaattttttgtgctctttcttagtacctgaagagtgctagcaatacactttgtaccatacttttcaacacaatctttgctattagttcaa |
2490154 |
T |
|
| Q |
519 |
attcatgtggacctgttttcaaaacccgttagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgttagcattcata |
618 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490155 |
attcatgtggacctgttttcaaaacccattagtttttcaatcaatgatataggttatgttgagaaagagtgtctaatagtgtgtactgttagcattcata |
2490254 |
T |
|
| Q |
619 |
c |
619 |
Q |
| |
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| |
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|
| T |
2490255 |
c |
2490255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 41591331 - 41590948
Alignment:
| Q |
19 |
gaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctac |
118 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||| |
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| T |
41591331 |
gaatattgctatttgggcctcctggaactgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaatgtgtccatgtctac |
41591232 |
T |
|
| Q |
119 |
catcacttctaaatggtttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
41591231 |
catcacttctaaatggtttggtgaagatgagaagaatgttcgcgctttattcacacttgcatccaaagtctccccaactattatatttgtcgatgaggtt |
41591132 |
T |
|
| Q |
219 |
gacagtatgcttgggcagcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggacttacctcgaaat |
318 |
Q |
| |
|
|| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| || || || | ||| |
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| T |
41591131 |
gatagcatgcttgggcaacgaacaagagttggggagcatgaagccatgcggaaaataaagaatgaatttatgtcccattgggacgggctcacgacaaaac |
41591032 |
T |
|
| Q |
319 |
cagaggatcgtattcttgtcctcgctgcaaccaataggccctttgacttggatgaagcaattattagacgatttgaaagaaggt |
402 |
Q |
| |
|
|| || || || ||||| || || |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||| |
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|
| T |
41591031 |
aaggagagcgcatccttgttcttgcagcaaccaataggccatttgacttggatgaagctattataaggcgatttgaaaggaggt |
41590948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 36 - 307
Target Start/End: Complemental strand, 11094713 - 11094442
Alignment:
| Q |
36 |
ccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttctaaatggt |
135 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||| ||||| || || || ||||||||||||||||| || || ||||| || |||||||| ||||||| |
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| T |
11094713 |
ccacctggtaccggaaaaacaatgctagcaaaggcgattgcgaatgaagcaggagcaagtttcattaacgtctcgatgtccacgatcacttcaaaatggt |
11094614 |
T |
|
| Q |
136 |
ttggtgaagacgagaagaatgtccgagctttattcacactggcagccaaggtctccccaactattatatttgtcgatgaggttgacagtatgcttgggca |
235 |
Q |
| |
|
| || ||||| || ||||||||||||||||| ||||| || ||||| ||||| | || ||||||||||| |||||||| |||||||| ||||| || || |
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| T |
11094613 |
tcggagaagatgaaaagaatgtccgagctttgttcacgctagcagctaaggttgctccgactattatattcgtcgatgaagttgacagcatgctcggtca |
11094514 |
T |
|
| Q |
236 |
gcgaacaagagttggggaacatgaagccatgcggaaaataaagaatgaattcatgtccaattgggatggact |
307 |
Q |
| |
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||| || ||||| || |||||||| |||||| |||| || || |||||||||||| | ||||||||||||| |
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| T |
11094513 |
gcgtactagagtcggagaacatgaggccatgaggaagattaaaaatgaattcatgacacattgggatggact |
11094442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 39697135 - 39697027
Alignment:
| Q |
19 |
gaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctac |
118 |
Q |
| |
|
|||||||||| ||||| || ||||| || |||||||||||||| |||||||| | |||| ||| |||||||||| ||||||||| | |||||||||| |
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|
| T |
39697135 |
gaatattgctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggtagcaaccgaagctggagcaaatttcattaacatctccatgtctag |
39697036 |
T |
|
| Q |
119 |
catcacttc |
127 |
Q |
| |
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||| ||||| |
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|
| T |
39697035 |
cattacttc |
39697027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 44926654 - 44926730
Alignment:
| Q |
30 |
tttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgt |
106 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| ||||| |
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|
| T |
44926654 |
tttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgt |
44926730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 44935086 - 44935170
Alignment:
| Q |
22 |
tattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgt |
106 |
Q |
| |
|
||||||| ||||| || ||||| |||||||| |||||||| || ||||| |||||||| || ||||||||||||||||| ||||| |
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|
| T |
44935086 |
tattgctttttggacctcctggtacaggaaagacaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcatcaatgt |
44935170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 45988472 - 45988556
Alignment:
| Q |
22 |
tattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgt |
106 |
Q |
| |
|
||||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| || || |||||||||||||||| ||||| |
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| T |
45988472 |
tattgctttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgctaatgaatctggagcaagtttcatcaatgt |
45988556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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