View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_23 (Length: 326)
Name: NF3472_low_23
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 28863296 - 28863002
Alignment:
| Q |
16 |
atccagaatcaacaggagcaaccctgcctattgcacttccaccaaagtcaggaaccacggattcatggttctttcctgcttcacgtttcaccttaaagct |
115 |
Q |
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| T |
28863296 |
atccagaatcaacaggagcaaccctgcctattgcacttccaccaaagtcaggaaccacggattcatggttctttcctgcttcacgtttcaccttaaagct |
28863197 |
T |
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| Q |
116 |
agctggcattacacctgctgataggtgaaacctatcaataactttccgctcattttgaaggcgaagagtcatttcgagaaactttttaacaatgccatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28863196 |
agctggcattacacctgctgataggtgaaacctatcaataactttccgctcattttgaaggcgaagagtcatttcgagaaactttttaacaatgccatat |
28863097 |
T |
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| Q |
216 |
tccttgttcatcaggaaagccagagcacttggcacaaagtctcttacaaacacctacatgcaaaaggggtgtgatatatgcataaggatcaaagt |
310 |
Q |
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| T |
28863096 |
tccttgttcatcaggaaagccagagcacttggcacaaagtctcttacaaacacctacatgcaaaaggggtgtgatatatgcataaggatcaaagt |
28863002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 55112563 - 55112608
Alignment:
| Q |
16 |
atccagaatcaacaggagcaaccctgcctattgcacttccaccaaa |
61 |
Q |
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| T |
55112563 |
atccagaatcaacaggagcaaccctgcctattgcactttcaccaaa |
55112608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 55112778 - 55112818
Alignment:
| Q |
231 |
aaagccagagcacttggcacaaagtctcttacaaacaccta |
271 |
Q |
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| T |
55112778 |
aaagccagagcacttggaacaaagtctctaacaaaaaccta |
55112818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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