View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_24 (Length: 325)
Name: NF3472_low_24
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 39795417 - 39795092
Alignment:
| Q |
1 |
ccagtggtagacagcaataacatccttgtctctgaagcatccaaagccacctcattattgatattct-----------aatcctataaaagagtatctac |
89 |
Q |
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| T |
39795417 |
ccagtggtagacagcaataacatccttgtctctgaagcatccaaagccacctcattattgatattcttaatctaatctaatcctataaaagagtatctac |
39795318 |
T |
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| Q |
90 |
ctcacataacaatttcatatatccaaatattccatggaagaccaaacaaaagatattagaaagagtagtttgagaaagcgtttgatgggaaagaagagta |
189 |
Q |
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| T |
39795317 |
ctcacataacaatttcatatatccaaatattccatggaagaccaaacaaaagatattagaaagagtagtttgagaaagcgtttgatgggaaagaagagta |
39795218 |
T |
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| Q |
190 |
gcatgttatggttgaagaaagtgaagaaagaaatttggccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatgga |
289 |
Q |
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| T |
39795217 |
gcatgttatggttgaagaaagtgaagaaagaaatttggccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatgga |
39795118 |
T |
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| Q |
290 |
tactgttgtttttaggatactctctg |
315 |
Q |
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| T |
39795117 |
taccgttgtttttaggatactctctg |
39795092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 39774204 - 39774121
Alignment:
| Q |
221 |
aatttggccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatggatactgttgtttttaggat |
307 |
Q |
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| T |
39774204 |
aatttggccttggagattctctgcatttaggttga---gacttgatcatattcaaacgacatttataaatactgtcatttttaggat |
39774121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 39791463 - 39791412
Alignment:
| Q |
255 |
aaacgacttgatcatcttcaaacga-cattcatggatactgttgtttttagg |
305 |
Q |
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| T |
39791463 |
aaacgacttgatcatcttcaaacaatcattcatggatactgtcgtttttagg |
39791412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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