View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3472_low_25 (Length: 324)

Name: NF3472_low_25
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3472_low_25
NF3472_low_25
[»] chr4 (7 HSPs)
chr4 (221-312)||(29847884-29847975)
chr4 (229-293)||(1745448-1745511)
chr4 (229-279)||(20650006-20650055)
chr4 (229-267)||(30257444-30257482)
chr4 (225-262)||(21121654-21121691)
chr4 (230-266)||(53813910-53813946)
chr4 (229-264)||(25100393-25100428)
[»] chr6 (3 HSPs)
chr6 (231-314)||(6257243-6257325)
chr6 (230-266)||(30892321-30892357)
chr6 (178-262)||(31303998-31304075)
[»] chr5 (2 HSPs)
chr5 (229-267)||(24099443-24099481)
chr5 (229-266)||(12566923-12566960)
[»] chr8 (2 HSPs)
chr8 (229-266)||(41940096-41940133)
chr8 (221-262)||(5950139-5950180)
[»] chr1 (4 HSPs)
chr1 (229-266)||(8326998-8327035)
chr1 (221-266)||(18628967-18629012)
chr1 (221-266)||(25023486-25023531)
chr1 (221-266)||(50959523-50959568)
[»] chr2 (5 HSPs)
chr2 (229-293)||(5136200-5136263)
chr2 (178-293)||(39711673-39711786)
chr2 (237-314)||(39228919-39228996)
chr2 (221-266)||(9848114-9848159)
chr2 (230-266)||(8216773-8216809)
[»] chr3 (1 HSPs)
chr3 (229-257)||(28180528-28180556)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 29847975 - 29847884
Alignment:
Q  221 gttactggcgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtggattgacctcttcaattctc 312  Q
    |||||||||| |||  ||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||    
T  29847975 gttactggcgcatttgactcatccctcgatctgagtttttacgcgtctgctttgaaaccgtagtgtttggtggattgacctcttcgattctc 29847884  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 1745448 - 1745511
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtgg 293  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  1745448 cgtattggactcatccctcaatctgagttcttacgcgtct-cttggaaactgttgtgtttggtgg 1745511  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 20650006 - 20650055
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaact 279  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  20650006 cgtattgaactcatccctcaatctgagttcttacgcatctg-tttgaaact 20650055  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 30257444 - 30257482
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgtc 267  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  30257444 cgtattgaactcatccctcgatctgagtttttacgcgtc 30257482  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 21121654 - 21121691
Alignment:
Q  225 ctggcgtattgaactcatccctcaatctgagtttttac 262  Q
    |||||||||||||||||||||||||| |||||||||||    
T  21121654 ctggcgtattgaactcatccctcaatttgagtttttac 21121691  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 53813946 - 53813910
Alignment:
Q  230 gtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    |||||||||||||||||| ||||||||||||||||||    
T  53813946 gtattgaactcatccctcgatctgagtttttacgcgt 53813910  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 264
Target Start/End: Original strand, 25100393 - 25100428
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgc 264  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25100393 cgtattgaactcatccctcgatctgagtttttacgc 25100428  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 6257243 - 6257325
Alignment:
Q  231 tattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtggattgacctcttcaattctctg 314  Q
    ||||| ||||||||||| ||||||||| |||||||| || |||||||||||||| ||||||||  |||  | ||||||||||||    
T  6257243 tattggactcatccctcgatctgagttcttacgcgtttg-tttgaaactgttgtgtttggtggtatgattttttcaattctctg 6257325  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 30892357 - 30892321
Alignment:
Q  230 gtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30892357 gtattgaactcatccctcgatctgagtttttacgcgt 30892321  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 31303998 - 31304075
Alignment:
Q  178 cgaaagagtctggttccgttaatccgaaagggtctgtagttacgttactggcgtattgaactcatccctcaatctgagtttttac 262  Q
    ||||||||| ||||||  |||| |||||||||||||       ||||||| ||||||||||||||||||| ||||||||| ||||    
T  31303998 cgaaagagtttggttcgattaacccgaaagggtctg-------gttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 24099443 - 24099481
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgtc 267  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  24099443 cgtattgaactcatccctcgatctgagtttttacgcgtc 24099481  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 12566923 - 12566960
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12566923 cgtattgaactcatccctcgatctgagtttttacgcgt 12566960  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 41940133 - 41940096
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  41940133 cgtattgaactcatccctcgatctgagtttttacgcgt 41940096  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 5950180 - 5950139
Alignment:
Q  221 gttactggcgtattgaactcatccctcaatctgagtttttac 262  Q
    ||||||| ||||||||||||||||||| || |||||||||||    
T  5950180 gttactgacgtattgaactcatccctcgatttgagtttttac 5950139  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 8327035 - 8326998
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  8327035 cgtattgaactcatccctcgatctgagtttttacgcgt 8326998  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 18629012 - 18628967
Alignment:
Q  221 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  18629012 gttactgacgtattggactcatccctcaatctgagttcttacgcgt 18628967  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 25023531 - 25023486
Alignment:
Q  221 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    ||||||| ||||||| | |||||||||||| |||||||||||||||    
T  25023531 gttactgacgtattggattcatccctcaatttgagtttttacgcgt 25023486  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 50959568 - 50959523
Alignment:
Q  221 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    ||||||| ||||||| ||||||||||| ||||||||| ||||||||    
T  50959568 gttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 5136200 - 5136263
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtgg 293  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| || ||||| ||||| ||||||||    
T  5136200 cgtattggactcatccctcgatctgagttcttacgcgtctg-ttggaaaccgttgtatttggtgg 5136263  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 39711786 - 39711673
Alignment:
Q  178 cgaaagagtctggttccgttaat-ccgaaagggtctgtagttacgttactggcgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaa 276  Q
    |||||| |||||||||||||||| ||||||||||||||   |  ||||||  ||||||||||||||  || ||| ||||||||||||| ||||  |||||    
T  39711786 cgaaagggtctggttccgttaataccgaaagggtctgt---ttggttactaacgtattgaactcattactaaatttgagtttttacgcatctg-attgaa 39711691  T
Q  277 act-gttgtttttggtgg 293  Q
    ||| ||||| ||||||||    
T  39711690 actggttgtgtttggtgg 39711673  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 39228919 - 39228996
Alignment:
Q  237 actcatccctcaatctgagtttttacgcgtctgctttgaaactg-ttgtttttggtggattgacctcttcaattctctg 314  Q
    ||||||||||| ||||||||| ||||||||||| | |||||||| |||| |||||||| ||||| ||||| | ||||||    
T  39228919 actcatccctcgatctgagttcttacgcgtctg-tctgaaactgcttgtgtttggtggtttgacttcttcgaatctctg 39228996  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 9848114 - 9848159
Alignment:
Q  221 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    ||||||| ||||||| ||||||||||| ||||||||| ||||||||    
T  9848114 gttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 8216809 - 8216773
Alignment:
Q  230 gtattgaactcatccctcaatctgagtttttacgcgt 266  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8216809 gtattgaactcatcccttgatctgagtttttacgcgt 8216773  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 28180556 - 28180528
Alignment:
Q  229 cgtattgaactcatccctcaatctgagtt 257  Q
    |||||||||||||||||||||||||||||    
T  28180556 cgtattgaactcatccctcaatctgagtt 28180528  T

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