View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3472_low_26 (Length: 316)

Name: NF3472_low_26
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3472_low_26
NF3472_low_26
[»] chr4 (1 HSPs)
chr4 (1-298)||(53680930-53681227)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 53681227 - 53680930
Alignment:
Q  1 tttggaaatgtggtggcagactaattattgcgttccattgaaattttcaccgtgaaaaccagaagctccaatttgtagcttcagcttcaccgtaaaattg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53681227 tttggaaatgtggtggcagactaattatcgcgttccattgaaattttcaccatgaaaaccagaagctccaatttgtagcttcagcttcaccgtgaaattg 53681128  T
Q  101 tctagctgcaccacatttccaaacacataccaagtctagggtggccactacnnnnnnnataggaaaaacttaacattcactaatattaatatagaagggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||    
T  53681127 tctagctgcaccacatttccaaacacataccaagtctagggtggccactactttttttataagaaaaacttaacattcactaatattaatatagaagggg 53681028  T
Q  201 gaatggatcaaagacacaagttgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcattt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53681027 gaatggatcaaagacacaagttgaaccagtaatcaaacccaagagttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcattt 53680930  T

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