View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3472_low_27 (Length: 316)
Name: NF3472_low_27
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 23320995 - 23321111
Alignment:
| Q |
19 |
gttgtgttgttactgatggtggatttgctacacagcttgaaaaacatggtgcttttatcaatgatcctctttggagtgctatttgtttgatcaaacagcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23320995 |
gttgtgttgttactgatggtggatttgctacacagcttgaaaaacatggtgcttttatcaatgatcctctttggagtgctatttgtttgatcaaacagcc |
23321094 |
T |
|
| Q |
119 |
acatcttattaagaagg |
135 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
23321095 |
acatcttattaagaagg |
23321111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 23321209 - 23321291
Alignment:
| Q |
217 |
gacatgccttcgactcaacagacacacgtgattgcattgaattatgtgattttctaagatcattaatggtgtcggcttgtcat |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23321209 |
gacatgccttcgactcaacagacacatgtgattgcattgaattatgtgattttctaagattattaatggtgtcggcttgtcat |
23321291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 43942374 - 43942324
Alignment:
| Q |
239 |
cacacgtgattgcattgaattatgtgattttctaagatcattaatggtgtc |
289 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| | ||||||| ||||||| |
|
|
| T |
43942374 |
cacacgtgattacattgaattatgttattttctcaaatcattattggtgtc |
43942324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 4786362 - 4786406
Alignment:
| Q |
254 |
tgaattatgtgattttctaagatcattaatggtgtcggcttgtca |
298 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||||||| ||||| |
|
|
| T |
4786362 |
tgaattatgtgattttcttaaattattaatggtgtcggcgtgtca |
4786406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University