View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3472_low_30 (Length: 289)

Name: NF3472_low_30
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3472_low_30
NF3472_low_30
[»] chr4 (6 HSPs)
chr4 (67-275)||(38088562-38088769)
chr4 (14-67)||(1796671-1796724)
chr4 (22-67)||(12473833-12473878)
chr4 (22-67)||(12528242-12528287)
chr4 (22-57)||(35869578-35869613)
chr4 (22-56)||(22343466-22343500)
[»] chr8 (2 HSPs)
chr8 (1-66)||(24337828-24337894)
chr8 (30-67)||(11254025-11254062)
[»] chr2 (5 HSPs)
chr2 (1-65)||(34392080-34392145)
chr2 (14-67)||(4775756-4775809)
chr2 (22-66)||(4779714-4779758)
chr2 (22-66)||(21606168-21606212)
chr2 (22-66)||(37357915-37357959)
[»] chr6 (4 HSPs)
chr6 (16-66)||(10503257-10503307)
chr6 (22-67)||(5403873-5403918)
chr6 (16-66)||(32644836-32644885)
chr6 (30-66)||(1211842-1211878)
[»] chr7 (3 HSPs)
chr7 (22-66)||(48250285-48250329)
chr7 (30-66)||(48072524-48072560)
chr7 (30-67)||(32694567-32694604)
[»] scaffold0519 (1 HSPs)
scaffold0519 (30-67)||(11331-11368)
[»] scaffold0229 (1 HSPs)
scaffold0229 (30-67)||(13002-13039)
[»] chr5 (4 HSPs)
chr5 (30-67)||(33858535-33858572)
chr5 (22-66)||(11607532-11607576)
chr5 (22-65)||(19357261-19357304)
chr5 (30-67)||(9827903-9827940)
[»] chr3 (5 HSPs)
chr3 (22-67)||(44380383-44380428)
chr3 (14-66)||(37742846-37742898)
chr3 (15-68)||(17466395-17466448)
chr3 (30-67)||(19619235-19619272)
chr3 (31-67)||(32319435-32319471)
[»] chr1 (2 HSPs)
chr1 (14-62)||(32676257-32676305)
chr1 (30-66)||(46435463-46435499)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 67 - 275
Target Start/End: Original strand, 38088562 - 38088769
Alignment:
Q  67 gcctaaaccgtgaaataagtttggggattttgtgtttattgctagttacagcccaccttcgtcttcttagttacacctagtcaccatttcatcaacaaaa 166  Q
    |||||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38088562 gcctaaacggtgaaataagtttggaggttttgtgtttattgctagttaca-cccaccttcgtcttcttagttacacctagtcaccatttcatcaacaaaa 38088660  T
Q  167 tacacatccttttaagtccttcaataatttttcttaaacctcccctaatattttctatcgacaaatttagtccccagtccttaaaagttctacacatggc 266  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  38088661 tgcacatccttttaagtccttcaataatttttcttaaacctcccctaatattttctatcgacaaatttagtccccagtccttaaaggttatacacatggc 38088760  T
Q  267 agtgtatag 275  Q
    |||||||||    
T  38088761 agtgtatag 38088769  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 1796671 - 1796724
Alignment:
Q  14 gcacaatataattgaacaatggtatataccattatggtacacaattgctatccg 67  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| || ||||||    
T  1796671 gcacaatttaattggacaatggtatataccattatggtacacaagtgttatccg 1796724  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12473833 - 12473878
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatccg 67  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  12473833 taattgagcaatggtatataccattatggtacacaagtgctatccg 12473878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12528242 - 12528287
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatccg 67  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||    
T  12528242 taattgagcaatggtatataccattatggtacacaagtgctatccg 12528287  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 35869613 - 35869578
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaa 57  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35869613 taattgaacaatggtatataccattatggtagacaa 35869578  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 22343466 - 22343500
Alignment:
Q  22 taattgaacaatggtatataccattatggtacaca 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  22343466 taattgaacaatgatatataccattatggtacaca 22343500  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24337894 - 24337828
Alignment:
Q  1 gggtgtgcca-atagcacaatataattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    |||||||||| |||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||    
T  24337894 gggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtgctatcc 24337828  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 11254062 - 11254025
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatccg 67  Q
    |||||||||||||||||||||||||||| |||||||||    
T  11254062 caatggtatataccattatggtacacaaatgctatccg 11254025  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34392145 - 34392080
Alignment:
Q  1 gggtgtgcca-atagcacaatataattgaacaatggtatataccattatggtacacaattgctatc 65  Q
    |||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||| |||||||    
T  34392145 gggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtgctatc 34392080  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 4775756 - 4775809
Alignment:
Q  14 gcacaatataattgaacaatggtatataccattatggtacacaattgctatccg 67  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| || ||||||    
T  4775756 gcacaatttaattggacaatggtatataccattatggtacacaaatgttatccg 4775809  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 4779714 - 4779758
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    |||||| ||||||||||||||||||||| ||||||| || |||||    
T  4779714 taattggacaatggtatataccattatgatacacaagtgttatcc 4779758  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 21606168 - 21606212
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    |||||| ||||||||||||||||||||| |||| || ||||||||    
T  21606168 taattggacaatggtatataccattatgatacagaagtgctatcc 21606212  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 37357959 - 37357915
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    |||||| |||||||||||||| |||||| ||||||| ||||||||    
T  37357959 taattggacaatggtatatactattatgatacacaagtgctatcc 37357915  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 10503307 - 10503257
Alignment:
Q  16 acaatataattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    ||||| |||||| ||||||||||||||||||||||||||||| ||||||||    
T  10503307 acaatctaattggacaatggtatataccattatggtacacaagtgctatcc 10503257  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 5403918 - 5403873
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatccg 67  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||    
T  5403918 taattggacaatggtatataccattatggtacacaagtgctatccg 5403873  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 32644885 - 32644836
Alignment:
Q  16 acaatataattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    ||||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  32644885 acaatctaattgaacaatggtatataccattat-gtacacaagtgctatcc 32644836  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 1211878 - 1211842
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatcc 66  Q
    |||||||||||||||||||||||||||| || |||||    
T  1211878 caatggtatataccattatggtacacaagtgatatcc 1211842  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 48250285 - 48250329
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||    
T  48250285 taattggacaatggtatataccattatggtacacaagtgctatcc 48250329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 48072524 - 48072560
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatcc 66  Q
    |||||||||||||||||||||||||||| ||||||||    
T  48072524 caatggtatataccattatggtacacaagtgctatcc 48072560  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 32694604 - 32694567
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatccg 67  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  32694604 caatggtatataccattatagtacacaagtgctatccg 32694567  T

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Target: scaffold0519 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 11331 - 11368
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatccg 67  Q
    |||||||||||||||||||||||||||| |||||||||    
T  11331 caatggtatataccattatggtacacaaatgctatccg 11368  T

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Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 13039 - 13002
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatccg 67  Q
    |||||||||||||||||||||||||||| |||||||||    
T  13039 caatggtatataccattatggtacacaagtgctatccg 13002  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 33858572 - 33858535
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatccg 67  Q
    |||||||||||||||||||||||||||| |||||||||    
T  33858572 caatggtatataccattatggtacacaagtgctatccg 33858535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 11607576 - 11607532
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||    
T  11607576 taattggacaatggtatatatcattatggtacacaagtgctatcc 11607532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 19357304 - 19357261
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatc 65  Q
    |||||| |||||| |||||||||||||||||||||| |||||||    
T  19357304 taattggacaatgatatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 9827903 - 9827940
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatccg 67  Q
    |||||||||||||||||||||||||||| || ||||||    
T  9827903 caatggtatataccattatggtacacaagtgttatccg 9827940  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 44380383 - 44380428
Alignment:
Q  22 taattgaacaatggtatataccattatggtacacaattgctatccg 67  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||    
T  44380383 taattggacaatggtatataccattatggtacacaagtgttatccg 44380428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 37742846 - 37742898
Alignment:
Q  14 gcacaatataattgaacaatggtatataccattatggtacacaattgctatcc 66  Q
    ||||| ||||||||  |||||||||||||||||||| ||||||| ||||||||    
T  37742846 gcacattataattgggcaatggtatataccattatgttacacaagtgctatcc 37742898  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 17466395 - 17466448
Alignment:
Q  15 cacaatataattgaacaatggtatataccattatggtacacaattgctatccgc 68  Q
    |||||| ||| ||| |||||||||||||||||| ||||||||| || |||||||    
T  17466395 cacaatctaactgagcaatggtatataccattacggtacacaaatgttatccgc 17466448  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 19619235 - 19619272
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatccg 67  Q
    |||||||||||||||||||||||||||  |||||||||    
T  19619235 caatggtatataccattatggtacacatgtgctatccg 19619272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 32319471 - 32319435
Alignment:
Q  31 aatggtatataccattatggtacacaattgctatccg 67  Q
    |||||||||||||||||||||| |||| |||||||||    
T  32319471 aatggtatataccattatggtaaacaagtgctatccg 32319435  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 32676257 - 32676305
Alignment:
Q  14 gcacaatataattgaacaatggtatataccattatggtacacaattgct 62  Q
    ||||||| |||||| |||||||||||||||||||| |||||||| ||||    
T  32676257 gcacaatctaattggacaatggtatataccattatagtacacaaatgct 32676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 46435499 - 46435463
Alignment:
Q  30 caatggtatataccattatggtacacaattgctatcc 66  Q
    |||||||||||||||||||||||||||| | ||||||    
T  46435499 caatggtatataccattatggtacacaagtcctatcc 46435463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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