View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_31 (Length: 280)
Name: NF3472_low_31
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 86 - 270
Target Start/End: Complemental strand, 46613902 - 46613718
Alignment:
| Q |
86 |
aggataagaggttattaatgcaccattttatgaatttt-ccaaatcttattaattagtcaattaannnnnnnnnnnnnnnaaaactggttttctctctct |
184 |
Q |
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| T |
46613902 |
aggataaggggttattaatgcatcattttatcaatttttccaaatcttattaattagtcaattgatttttcttttcttt-aaaactggttttctctctct |
46613804 |
T |
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| Q |
185 |
cctgcctcggtactgtttcgttctccatccgctggttattaaatctcactccactttcttatgctgccaaattttcttcctctgtg |
270 |
Q |
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| T |
46613803 |
cctgcctcggtactgtttggttctccatccgctggttagtaaatttcactccactttcttatgctgccaaattttcttcctttgtg |
46613718 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 270
Target Start/End: Complemental strand, 50157570 - 50157387
Alignment:
| Q |
95 |
ggttattaatgcaccattttatgaatttt-ccaaatcttattaattagtcaattaannnnnnnnnnnnnnnaaaactggttttctctctctcctgcctcg |
193 |
Q |
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| T |
50157570 |
ggttatcaatgcaccattttatgaatttttccaaatcttattaattagttaattaatttttctttttttt-aaaactggttttctctctctcctgcctcg |
50157472 |
T |
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| Q |
194 |
gtactgtttcgttctccatccg--------ctggttattaaatctcactccactttcttatgctgccaaattttcttcctctgtg |
270 |
Q |
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| T |
50157471 |
gtactgtttcattctccatccgcttactctctggttagtaaatttcactccagtttcttatgctgccaaattttcttcctttgtg |
50157387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 95 - 270
Target Start/End: Complemental strand, 9456712 - 9456530
Alignment:
| Q |
95 |
ggttattaatgcaccattttatgaatttt-ccaaatcttattaattagtcaattaannnnnnnnnnnnnnnaaaactggttttctctctctcctgcctcg |
193 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
9456712 |
ggttattaatgcaccattttatgaatttttccaaatcttattaattagttaattaatttattttttttt--aaaactggttttctctctctcctgcctcg |
9456615 |
T |
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| Q |
194 |
gtactgtttcgttctccatccg--------ctggttattaaatctcactccactttcttatgctgccaaattttcttcctctgtg |
270 |
Q |
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|||||||||| ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||| |
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| T |
9456614 |
gtactgtttcattctccatccgcttactctctggttagtaaatttcactccagtttcttatgctgccaaattttcttcctttgtg |
9456530 |
T |
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