View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_37 (Length: 247)
Name: NF3472_low_37
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 42944971 - 42945216
Alignment:
| Q |
1 |
tcaacctatgaattactaacatagactcgacact-aagaacgacatgtagacgctactaataatttgagaaaatgaaagttagtgaatgtaacaagtgtg |
99 |
Q |
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| T |
42944971 |
tcaacctatgaagtactaacatagactcgacatttaagaacgacatgtagacgctactaataatttgagaaaatgaaagttagtgaatgtaacaagtgtg |
42945070 |
T |
|
| Q |
100 |
ccggtgatgtgtctggacattggacacaccttcaatctgaagtatcggtgctatatttcaactcacaaacagccaacttcttccatagctaaaaggttca |
199 |
Q |
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| T |
42945071 |
ccggtgatgtgtctggacattggacacgccttcaatctgaagtatcggtgctatatttcaactcacaaacagccaacttcttccatagctaaaaggttca |
42945170 |
T |
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| Q |
200 |
tatgttcatgccctcctaagccattatctacatgatctgtgctcct |
245 |
Q |
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| T |
42945171 |
tatgttcatgccctcctaagccattatctacatgatttgtggtcct |
42945216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 30585167 - 30585118
Alignment:
| Q |
42 |
acatgtagacgctactaataatttgagaaaatgaaagttagtgaatgtaa |
91 |
Q |
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| T |
30585167 |
acatgtagacactaataataatttaagaaaatgaaagtgattgaatgtaa |
30585118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 11557159 - 11557123
Alignment:
| Q |
55 |
actaataatttgagaaaatgaaagttagtgaatgtaa |
91 |
Q |
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| T |
11557159 |
actaataatttgagaaaatgaaagtcattgaatgtaa |
11557123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 9018938 - 9018886
Alignment:
| Q |
40 |
cgacatgtagacgctactaataatttgagaaaatgaaagttagtgaatgtaac |
92 |
Q |
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|||||||||||| | | || |||||||||||||||||||| | |||||||||| |
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| T |
9018938 |
cgacatgtagacaccagtagtaatttgagaaaatgaaagtaattgaatgtaac |
9018886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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