View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_38 (Length: 246)
Name: NF3472_low_38
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 43186550 - 43186780
Alignment:
| Q |
1 |
atctttggacaatgccacttgaatcttaactat-aggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcataacata |
99 |
Q |
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| T |
43186550 |
atctttggacaatgccacttgaatcttaacttttaggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcataacata |
43186649 |
T |
|
| Q |
100 |
aattcattcattttcattattcatcgccgaaattcatccggactcgttattaaccaatatatttttatactaaaataatcaaacattaaaaaggatcttg |
199 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
43186650 |
aattcattaattttcattattcatcgcagaaattcatccggactcgttattaaccaatatatttttatactaacataatcaaacattaaaaagcatcttg |
43186749 |
T |
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| Q |
200 |
gactgtgtcttaccatgagaaacaaaacatt |
230 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
43186750 |
gactgtgtcttaccatgagaaacaaaacatt |
43186780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 23609323 - 23609379
Alignment:
| Q |
25 |
cttaactataggaatccacaacactcattttcattccatcttcgaaattcactctga |
81 |
Q |
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||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
23609323 |
cttaactgtaggattccacaacactcattttcattccaccagtgaaattcactctga |
23609379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 23622784 - 23622844
Alignment:
| Q |
33 |
taggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcat |
93 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||| ||||||| || |||||||| |
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| T |
23622784 |
taggaatccacatcactcattttcattccaccaccgaaatttactctgaatcattcttcat |
23622844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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