View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_4 (Length: 540)
Name: NF3472_low_4
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_4 |
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| [»] scaffold0474 (1 HSPs) |
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Alignment Details
Target: scaffold0474 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: scaffold0474
Description:
Target: scaffold0474; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 8672 - 9195
Alignment:
| Q |
1 |
ttatcaaatgaaaatcaacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttgatatatctagcaat |
100 |
Q |
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| T |
8672 |
ttatcaaatgaaaatcaacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttgatatatctagcaat |
8771 |
T |
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| Q |
101 |
atataaacatacatggttggtggtctatatgtttttcaaacaaaaatggagaaagaaa-taagattatgcaaagaaacacatactttgaattgattgcat |
199 |
Q |
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| T |
8772 |
atataaacatacatggttggtggtctatatgtttttcaaacaaaaatggagaaagaaaataagattatgcaaagaaacacatactttgaattgattgcat |
8871 |
T |
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| Q |
200 |
agtaagttcactcccttgtaaacttaaactcttgagggaagaaagtctactaagaggagatgcaatatcagtgtctttgaagttgttgtttgaaaggtca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8872 |
agtaagttcactcccttgtaaacttaaactcttgagggaagaaagtctactaagaggagatgcaatatcagtgtctttgaagttgttgtttgaaaggtca |
8971 |
T |
|
| Q |
300 |
aggatctcaaggttcttcaatatagcgcacaatcctacatgttaaattaatatattgtgttaccgacttactggtatgcaacaatcaatcaacattaatt |
399 |
Q |
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| T |
8972 |
aggatctcaaggttcttcaatatagcgcacaatcctacatgttaaattaatatattgtgttaccgacttactggtatgcaacaatcaatcaacattaatt |
9071 |
T |
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| Q |
400 |
cctccgataaaagaaaatggaaagtgttaattaccttgaaaatgaagatccgagtccaatccaatgccatccaaaactagttccttcaaagatgtaaatc |
499 |
Q |
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| T |
9072 |
cctccgataaaagaaaatggaaagtgttaattaccttgaaaatgaagatccgagtccaatccaatgccatccaaaactagttccttcaaagatgtaaatc |
9171 |
T |
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| Q |
500 |
cccttagtgaaggcaggatttcat |
523 |
Q |
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| T |
9172 |
cccttagtgaaggcaggatttcat |
9195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 24260406 - 24260754
Alignment:
| Q |
16 |
caacaaacctaggggccataagttcaaattgttcccaaacaattcaaggatctccagagatctgagttttgatatatctagcaatatat----aaacata |
111 |
Q |
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| T |
24260406 |
caacaaacctagggtccataagttcatattgtttgaagataagtcaaggatctccaaagacctcagttttgatatatctatcgatacatgataaaacata |
24260505 |
T |
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| Q |
112 |
catggttggtggtctatatgtttttcaaacaaaaatggagaaagaaataagatta----------tgcaaagaaacacatactttgaattgattgcatag |
201 |
Q |
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| T |
24260506 |
catcattggttgtctatatggttttcaaacaaaaaccgagaaaaaaataagattaataattattatgcaaagaaacacatactatgaattgatctcattg |
24260605 |
T |
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| Q |
202 |
taagttcactcccttgtaaacttaaactcttgagggaagaaagtctactaagaggagatgcaatatcagtgtctttgaagttgttgtttgaaaggtcaag |
301 |
Q |
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|||||| ||||| | |||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
24260606 |
taagttgactccatcctaaacttaaactcttgagtgaagaaagtccactaagagcagatgcaatatcagtttctttgaagttgttgttcgaaaggtcaag |
24260705 |
T |
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| Q |
302 |
gatctcaaggttcttcaatatagcgcacaatcctacatgttaaattaat |
350 |
Q |
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| T |
24260706 |
gatctcgagattctttaatatggcgcataatcctgcacgttaaattaat |
24260754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 24260072 - 24260197
Alignment:
| Q |
41 |
aaattgttcccaaacaattcaaggatctccagagatctgagttttgatatatctagcaatatataaacatacatggttggtggtctatatgtttttcaaa |
140 |
Q |
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| T |
24260072 |
aaattgttccaagataagtcaaggatctccaaagacctcagttttgatatatctagcaacatataaacatacatgattggaggtctatatgtttttcaaa |
24260171 |
T |
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| Q |
141 |
caaaaatggagaaagaaataagatta |
166 |
Q |
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| T |
24260172 |
caaaaatggagaaagaaataagatta |
24260197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 430 - 523
Target Start/End: Original strand, 24266502 - 24266595
Alignment:
| Q |
430 |
ttaccttgaaaatgaagatccgagtccaatccaatgccatccaaaactagttccttcaaagatgtaaatccccttagtgaaggcaggatttcat |
523 |
Q |
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| T |
24266502 |
ttaccttgtatatgaagatctgagtccaatccaatcacactcaaatggagttccttcaaagatttgaatccccttagtgaaggcaggatttcat |
24266595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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