View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_40 (Length: 236)
Name: NF3472_low_40
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 43061713 - 43061492
Alignment:
| Q |
1 |
taattttctaatttagctcttaacgggaaacattaacttatgaaaaattcatataactagcgtatttacccggcgttgcctaggttacatatagtaaggt |
100 |
Q |
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| T |
43061713 |
taattttctaatttagctcttaatgggaaacattaacttatgaaaaattcatataactagcgtatttacccggcgttgcccaggttacatatagtaaggt |
43061614 |
T |
|
| Q |
101 |
ttcaacaaaattttactgctcagaatgaaaaaattctagtttgcaagaaaggtttcaacaaaatttgctctagtgtgaagaaaagcagtaaatcaacata |
200 |
Q |
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| T |
43061613 |
ttcaacaaaattttactgctcagaatgaaaaaattctagtttgcaagaaaggtttcaacaaaatttgctctagtgtgaagaaaagcagtaaatcaacata |
43061514 |
T |
|
| Q |
201 |
tttatcttaaccactactatat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
43061513 |
tttatcttaaccactactatat |
43061492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 11874008 - 11874047
Alignment:
| Q |
54 |
taactagcgtatttacccggcgttgcctaggttacatata |
93 |
Q |
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| T |
11874008 |
taactagcgtatttacccgacgttgcctgggttacatata |
11874047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 9855586 - 9855626
Alignment:
| Q |
53 |
ataactagcgtatttacccggcgttgcctaggttacatata |
93 |
Q |
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| T |
9855586 |
ataactagcgtatttatccggcgttgcccagattacatata |
9855626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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