View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_41 (Length: 236)
Name: NF3472_low_41
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 42944670 - 42944451
Alignment:
| Q |
1 |
ctgttggaagatgatttcagggaccttcaacatgtgtgcaagtttttctgacatatggtatagcatgaagtctgaatgcttgttgactgtaaatagattg |
100 |
Q |
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| T |
42944670 |
ctgttggaagatgatttcagggaccttcaacatgtgtgcaagtttttctgacatatggtatagcatgaagtctgaatgtttgttgtctgtaaatagattg |
42944571 |
T |
|
| Q |
101 |
taaggaaattatgcacaactagttcaatactttggtgacattttgtgttcagaaatagaagagaaaaacttgcttcattttttcttacttttctttgtta |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944570 |
taaggaaattatgcacaactagttcgatactttggtgacattttgtgttcagaaatagaagagaaaaacttgcttcattttttcttacttttctttgtta |
42944471 |
T |
|
| Q |
201 |
cattaaatctctatttctta |
220 |
Q |
| |
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||||| |||||||||||||| |
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| T |
42944470 |
cattacatctctatttctta |
42944451 |
T |
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