View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_6 (Length: 472)
Name: NF3472_low_6
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 28 - 458
Target Start/End: Complemental strand, 30661455 - 30661020
Alignment:
| Q |
28 |
cgtgcaaattttagtgannnnnnnaaatgcacatttatgatccgatgtcgggtggagaaagtagtgtccaacaaaagataatagnnnnnnncgtgatctc |
127 |
Q |
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| T |
30661455 |
cgtgcaaattttagtgatttttctaaatgcacatttatgatccgatgtcgggtggagaaagtagtgtccaacaaaagataatagaaaaaaacgtgatctc |
30661356 |
T |
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| Q |
128 |
aattcataataataataataa---acaagaaagcaatgtatgcatgcatgttaaccacccaataagttcatgaacaacttaacagtttaataagtagtta |
224 |
Q |
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| T |
30661355 |
aattcataataataataataataaacaagaaagcaatgtatgcatgcatgttaaccacccaataagttcatgaacaacttaacagtttaataagtagtta |
30661256 |
T |
|
| Q |
225 |
aatatcgatagtaagttgttaaaatacgtgaacgaattgatagtacatggttaaatatagaaacaacttaacagtttaatagagtcgaagatcttttaaa |
324 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30661255 |
aatatcaatagtaagttgttaaaatacgtgaacgaattgatagtacatggttaaatatagaaacaacttaacagtttaatagaatcgaagatcttttaaa |
30661156 |
T |
|
| Q |
325 |
a--atattggcatttaaaatggagtaggaaacaaaacagtacacacccacgtgtgaaattaaacaaacaagctacaaccacgtttcagtttccaacccac |
422 |
Q |
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| T |
30661155 |
aatatatgggcatttaaaatggagtaggaaacaaaacagtacacacccacgtgtgaaattaaacaaacaagctacaaccacgtttcagtttccaacccac |
30661056 |
T |
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| Q |
423 |
aaactacaagctgtaaagcacaccgcactctctctg |
458 |
Q |
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| T |
30661055 |
aaactacaagctgtaaagcacaccgcactctctctg |
30661020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 26393027 - 26392957
Alignment:
| Q |
259 |
aattgatagtacatggttaaatatagaaac-aacttaacagtttaatagagtcgaagatcttttaaaaata |
328 |
Q |
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||||||||||| |||||||||||||| || ||||| |||||||||||||||||| || ||||| |||||| |
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| T |
26393027 |
aattgatagtaaatggttaaatatagggaccaacttgacagtttaatagagtcgaggacctttttaaaata |
26392957 |
T |
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