View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3472_low_9 (Length: 441)
Name: NF3472_low_9
Description: NF3472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3472_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 37604322 - 37604733
Alignment:
| Q |
18 |
cagtcctgtggcactaccgatacctgctgttatcgtatcccataacccagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604322 |
cagtcctgtggcactaccgatacctgctgttatcgtatcccataacctagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaa |
37604421 |
T |
|
| Q |
118 |
tcattctcataattggtctcacagcaggggcagtagtccgaagaaggaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaaca |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
37604422 |
tcattctcataattggtctcacagaaggggcagtagtccgaagaagggacccccc-ttccttgaagtcttatatatgcgaagggagaacacccctcaaca |
37604520 |
T |
|
| Q |
218 |
aactccatnnnnnnnctttgatccgttgaggtatgtgcagattccacattctcatccaatctcccggcattctatactccacattatcaatgagagtttc |
317 |
Q |
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| T |
37604521 |
acctccataaaaaaactttgatccgttgaggtatgtgcagattccacattctcgtccaatctcccggcattctatactccacattatgaatgagagtttc |
37604620 |
T |
|
| Q |
318 |
catatcatacatgtatgcagacttcactgtataatgccctttgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttg |
417 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604621 |
catatcatacatgtatgcagacttcgctgtataatgccctttgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttg |
37604720 |
T |
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| Q |
418 |
cggatttcttctc |
430 |
Q |
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| T |
37604721 |
cggatttcttctc |
37604733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 35 - 292
Target Start/End: Original strand, 8178727 - 8178980
Alignment:
| Q |
35 |
cgatacctgctgttatcgtatcccataacccagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggt |
134 |
Q |
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|||||||||||| ||| |||||||| ||||||||||||||| || |||||| | || |||||||||| |||| |||||||||||||||||||||||| |
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| T |
8178727 |
cgatacctgctgctattacatcccatagcccagcttcaatccatacttgtttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggt |
8178826 |
T |
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| Q |
135 |
ctcacagcaggggcagtagtccgaagaaggaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnct |
234 |
Q |
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|||||| ||||||| | |||||| |||| | | ||||||||||||| ||| ||| || |||||||| | || |||||| || |
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| T |
8178827 |
ctcacaatgggggcagcaatccgaacaagggaccccctat--cttgaagtctcattc--gcgtaggaagaacacccctaagcaccctccataagaaaact |
8178922 |
T |
|
| Q |
235 |
ttgatccgttgaggtatgtgcagattccacattctcatccaatctcccggcattctat |
292 |
Q |
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||||||| ||||||||| || ||||||||||||||||||||||| |||| || ||||| |
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| T |
8178923 |
ttgatcctttgaggtatatgaagattccacattctcatccaatcacccgacactctat |
8178980 |
T |
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