View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3473_low_3 (Length: 270)

Name: NF3473_low_3
Description: NF3473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3473_low_3
NF3473_low_3
[»] chr1 (17 HSPs)
chr1 (1-252)||(52820737-52820988)
chr1 (1-83)||(11902605-11902687)
chr1 (1-56)||(11902701-11902756)
chr1 (1-83)||(11880105-11880187)
chr1 (1-56)||(11880201-11880256)
chr1 (1-95)||(11880393-11880487)
chr1 (1-95)||(11902893-11902987)
chr1 (1-56)||(11879865-11879920)
chr1 (1-82)||(11880297-11880378)
chr1 (1-82)||(11902797-11902878)
chr1 (1-95)||(11889849-11889943)
chr1 (1-38)||(11889801-11889838)
chr1 (121-209)||(11880459-11880547)
chr1 (4-92)||(11882177-11882265)
chr1 (4-92)||(11891411-11891499)
chr1 (121-209)||(11902959-11903047)
chr1 (4-56)||(11904974-11905026)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 52820988 - 52820737
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaattcaccaccacctcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52820988 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaattcaccaccacctcctg 52820889  T
Q  101 taaaatctccacctccaccaacaccgtactactatcagtctccaccaccacccaagtacactccacctccatactactataattctcctcctccgccagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52820888 taaaatctccacctccaccaacaccgtactactatcagtctccaccaccacccaagtacactccacctccatactactataattctcctcctccgccagt 52820789  T
Q  201 tgtctatccccctccttaccaccacccattgattgtgaaggtagtgggtaaa 252  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52820788 tgtatatccccctccttaccaccacccattgattgtgaaggtagtgggtaaa 52820737  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11902605 - 11902687
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaa 83  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||  | || ||| |||||||||| |||||    
T  11902605 ccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaa 11902687  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11902701 - 11902756
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctcc 56  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||    
T  11902701 ccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcc 11902756  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11880105 - 11880187
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaa 83  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||  | || ||| |||||||||| |||||    
T  11880105 ccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccatacaccttactattacaa 11880187  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11880201 - 11880256
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctcc 56  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||    
T  11880201 ccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcc 11880256  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11880393 - 11880487
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaattcaccaccacc 95  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| |||||  | || ||  |||||||||||||||| || ||||||||    
T  11880393 ccttcaccgtctcctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccacc 11880487  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11902893 - 11902987
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaattcaccaccacc 95  Q
    |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| |||||  | || ||  |||||||||||||||| || ||||||||    
T  11902893 ccttcaccgtctcctccaccaccatattactacaaatctcctccccctccgtctcctattccccacacaccttactactacaagtccccaccacc 11902987  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11879865 - 11879920
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctcc 56  Q
    |||||||| |||||||||||||| || || ||||| ||||||||||||||||||||    
T  11879865 ccttcaccgtctcctccaccaccatactactacaaatctcctcctcctccatctcc 11879920  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11880297 - 11880378
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactaca 82  Q
    ||||||||||||||||||||||| || || ||||| || ||||||| |||||||||  | || ||| |||||||||| ||||    
T  11880297 ccttcaccatctcctccaccaccatactactacaaatcccctcctcatccatctcccattccccatacaccttactattaca 11880378  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11902797 - 11902878
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactaca 82  Q
    ||||||||||||||||||||||| || || ||||| || ||||||| |||||||||  | || ||| |||||||||| ||||    
T  11902797 ccttcaccatctcctccaccaccatactactacaaatcccctcctcatccatctcccattccccatacaccttactattaca 11902878  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11889849 - 11889943
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaattcaccaccacc 95  Q
    |||||||| ||||| || ||||| || || ||||| || |||||||||||||| ||  | || ||| |||||||||||||||| || ||||||||    
T  11889849 ccttcaccgtctccacccccaccatactactacaaatcacctcctcctccatcacctattccccatacaccttactactacaagtccccaccacc 11889943  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11889801 - 11889838
Alignment:
Q  1 ccttcaccatctcctccaccaccctattattacaagtc 38  Q
    ||||||||||||||||||||||| || |||||||||||    
T  11889801 ccttcaccatctcctccaccaccatactattacaagtc 11889838  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 11880459 - 11880547
Alignment:
Q  121 acaccgtactactatcagtctccaccaccacccaagtacactccacctccatactactataattctcctcctccgccagttgtctatcc 209  Q
    ||||| ||||||||  |||| ||||||||||| |||  |  |||||| |||||||| || |||||||||||||| || ||||| |||||    
T  11880459 acaccttactactacaagtccccaccaccaccaaaggtccttccaccaccatactattacaattctcctcctccacctgttgtgtatcc 11880547  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 11882177 - 11882265
Alignment:
Q  4 tcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaattcaccacc 92  Q
    ||||||||||| |||||||| |||||||| ||||| || || || ||||| |||   |||| |||||| ||||||||||| || |||||    
T  11882177 tcaccatctcccccaccaccttattattataagtcaccacccccaccatccccgtcccctcctccaccatactactacaagtctccacc 11882265  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 11891411 - 11891499
Alignment:
Q  4 tcaccatctcctccaccaccctattattacaagtctcctcctcctccatctccggtacctcatccaccttactactacaattcaccacc 92  Q
    ||||||||||| |||||||| |||||||| ||||| || || || ||||| |||   |||| |||||| ||||||||||| || |||||    
T  11891411 tcaccatctcccccaccaccttattattataagtcaccacccccaccatccccgtcccctcctccaccatactactacaagtctccacc 11891499  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 11902959 - 11903047
Alignment:
Q  121 acaccgtactactatcagtctccaccaccacccaagtacactccacctccatactactataattctcctcctccgccagttgtctatcc 209  Q
    ||||| ||||||||  |||| ||||||||||| |||  |  |||||| |||||||| || |||||||||||||| || ||||| |||||    
T  11902959 acaccttactactacaagtccccaccaccaccaaaggtccttccaccaccatactattacaattctcctcctccacctgttgtgtatcc 11903047  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 11904974 - 11905026
Alignment:
Q  4 tcaccatctcctccaccaccctattattacaagtctcctcctcctccatctcc 56  Q
    ||||||||||| |||||||| || ||||||||||| || ||||| ||||||||    
T  11904974 tcaccatctccaccaccaccatactattacaagtcaccacctccaccatctcc 11905026  T

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