View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3473_low_4 (Length: 267)
Name: NF3473_low_4
Description: NF3473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3473_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 8257300 - 8257046
Alignment:
| Q |
1 |
ttttctataaaggcaacaggtaa-taacaagaggaagtattattcaaattcaaattaaaaatacagcgagatgcataatatattgatgtcctagccaaag |
99 |
Q |
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| T |
8257300 |
ttttctataaaggcaacaggtaaataacaagaggaagtattattcaaattcaaattaaaaatacagcgagatgcataagatattgatgtcctagccaaag |
8257201 |
T |
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| Q |
100 |
catgagaacggtcattattagccaccaatggcag-ccccgagggtgggcgagatgggtaactgctcaggatcccggggcattagttagcatttctctttt |
198 |
Q |
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| T |
8257200 |
catgagaactgtcattattagccaccaatggcagcccccgagggtgggcgagatgggtaactgctcaggaccccggggcattagttagcattttccttta |
8257101 |
T |
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| Q |
199 |
actaatatttgaataacaaattaatatcattaaaattataattacatacaaattc |
253 |
Q |
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| T |
8257100 |
actaatatttgaataacaaattaatatcattaaaattataattacatacaaattc |
8257046 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Complemental strand, 4635440 - 4635401
Alignment:
| Q |
203 |
atatttgaataacaaattaatatcattaaaattataatta |
242 |
Q |
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|||||||||||||||||| |||| |||||||||||||||| |
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| T |
4635440 |
atatttgaataacaaatttatattattaaaattataatta |
4635401 |
T |
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