View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3474_high_1 (Length: 523)
Name: NF3474_high_1
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3474_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 10 - 509
Target Start/End: Complemental strand, 5374757 - 5374258
Alignment:
| Q |
10 |
catcatcatctctagctgattttgattctgttgtttcatctattggaccaagtgctgcttcatacccttttaagaaaaaccttgcacctatgagtttttt |
109 |
Q |
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| T |
5374757 |
catcatcatctctagctgattttgattctgttgtttcatctattggaccaagtgctgcttcatacccttttaagaaaaaccttgcacctatgagtttttt |
5374658 |
T |
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| Q |
110 |
gttgcagtgtgacgaattcatgttgttaccagtttcacatacacctttccaattacttggtattggacctagtcctgtgtcatctaagctttttagctct |
209 |
Q |
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| T |
5374657 |
gttgcagtgtgatgaattcatgttgttaccagtttcacatacacctttccaattacttggtattggacctagtcctgtgtcatctaagctttttagctct |
5374558 |
T |
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| Q |
210 |
ggccatataccagtgtcaagaataccaatgattacttgactttgttgtctagagtgaggtaaaagagtgtttgtttttggcaaaccaaggaactgtggtg |
309 |
Q |
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| T |
5374557 |
ggccatataccagtgtcaagaataccaatgattacttgactttgttgtctagagtgaggtaaaagagtgtttgtttttggcaaaccaaggaactgtggtg |
5374458 |
T |
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| Q |
310 |
ttcttgttgtgtgaagttggtatctgagttcaggtataacatcgagaattccgggctgttttgaaagtgtttcggcttcttggttagttagtcttgtgga |
409 |
Q |
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| T |
5374457 |
ttcttgttgtgtgaagttggtatctgagttcaggtataacatcgagaattccgggctgttttgaaagtgtttcggcttcttggttagttagtcttgtgga |
5374358 |
T |
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| Q |
410 |
gtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatgtatcgaaccagttaaggtgatcagtgaatgtt |
509 |
Q |
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| T |
5374357 |
gtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatgtatcgaaccagttaaggtgatcagtgaatgtt |
5374258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 477
Target Start/End: Original strand, 47367987 - 47368284
Alignment:
| Q |
180 |
agtcctgtgtcatctaagctttttagctctggccatataccagtgtcaagaataccaatgattacttgactttgttgtctagagtgaggtaaaagagtgt |
279 |
Q |
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||||| |||||||| ||||||||||| || ||||||| ||| ||||||| | |||| || || | |||||||| || |||| |||||||||||| |
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| T |
47367987 |
agtccagtgtcatcgaagctttttagttcaggccatacacctgtgtcaattactccaacaatcacctcactttgttttccagaggacggtaaaagagtga |
47368086 |
T |
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| Q |
280 |
ttgtttttggcaaaccaaggaactgtggtgttcttgttgtgtgaagttggtatctgagttcaggtataacatcgagaattccgggctgttttgaaagtgt |
379 |
Q |
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| T |
47368087 |
ttgttttctccaatccgaggaactctggtgttcgagttgtgtgaagctcgtatctgacatcagggataaccgagagaattcccggttgctttgtgagtaa |
47368186 |
T |
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| Q |
380 |
ttcggcttcttggttagttagtcttgtggagtatccatgagctatgtgtttgtatgtgtatagaatctctgctgtttctgatactgattttagcgatg |
477 |
Q |
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|| |||||||| ||||||| ||||||||| | |||||||||| |||||||| || || | ||||||| || ||||||||||||||||| |||| |
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| T |
47368187 |
gtctgcttcttgagtagttagccttgtggagaagccatgagctacatgtttgtaggtatacatcgtctctgcagtgtctgatactgattttagtgatg |
47368284 |
T |
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