View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3474_high_2 (Length: 420)
Name: NF3474_high_2
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3474_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 30297815 - 30297421
Alignment:
| Q |
2 |
catcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaagattctcaaatattttggaacgtttgtcaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297815 |
catcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaagattctcaaatattttggaacgtttgtcaaa |
30297716 |
T |
|
| Q |
102 |
cctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaaatggttagcattaaagaaaaaagggttctcttgatcgtgtcgatcatct |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297715 |
cctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaaatggttagcattaaagaaaaaagggttctcttgatcgtgtcgatcatct |
30297616 |
T |
|
| Q |
202 |
ctagaagatacacaaactgaggccaggnnnnnnnttcccagcagcatcaaaagttgaaatagagctttgattgccataatgatttgaattattttcactt |
301 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30297615 |
ctagaagatacacaaactgaggccaggaaaaaaattcccagcagcatcaaaagttgaaatggagctttgattgccataatgatttgaattattttcactt |
30297516 |
T |
|
| Q |
302 |
tgctatgatgagagatgagatgagggagtattgagatcaaagggtatttataggaatagaaatggtagctatatgattaacatgcacaaacattt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30297515 |
tgctatgatgagagatgagatgagggagtattgagatcaaagggtatttataggaatagaaatggtagctatatgattaacatgcacaaacattt |
30297421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 30303001 - 30302610
Alignment:
| Q |
2 |
catcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaagattctcaaatattttggaacgtttgtcaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |
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| T |
30303001 |
catcattgtgttgtggaagaaagagagtgtgaggtttggagtggtattccaaaaggcgatagttttggagattctcaaatatttttgaacgtttgtcgaa |
30302902 |
T |
|
| Q |
102 |
cctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaaatggttagcattaaagaaaaaagggttctcttgatcgtgtcgatcatct |
201 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
30302901 |
cctttgaaggagacgaatgtgaccattttcattttcaaaaagagtttggaaacggttagcattaaagaaaaaagggttctcttgatcgtgttgatcgtct |
30302802 |
T |
|
| Q |
202 |
ctagaagatacacaaactgaggccaggnnnnnnnttcccagcagcatcaaaagttgaaatagagctttgattgccataatgatttgaattattttcactt |
301 |
Q |
| |
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||||||| |||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30302801 |
ttagaagagacacaaactgaggctaggaaaaaaattcccagcagcatgaaaagttgaaatggagctttgattgccataatgatttgaattattttcactt |
30302702 |
T |
|
| Q |
302 |
tgctatgatgagagatgagatgagggagtattgagatcaaaggg---tatttataggaatagaaatggtagctatatgattaacatgcacaaacattt |
396 |
Q |
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| |||||||| |||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||| ||||| ||||||| |
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| T |
30302701 |
t-atatgatga-----gagatgagtgagtattgagatcaaagggtactatttataactatagaaatggtatctatatgattaatttgcaccaacattt |
30302610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 30290315 - 30289942
Alignment:
| Q |
2 |
catcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaagattctcaaatattttggaacgtttgtcaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||| || |
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| T |
30290315 |
catcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagacggtagttttggagattttcaaatattttggagcgtttgtcgaa |
30290216 |
T |
|
| Q |
102 |
cctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaaatggttagcattaaagaaaaaagggttctcttgatcgtgtcgatcatct |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| | |
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| T |
30290215 |
tctttgaaggagacgaatgtgaccattttcgttttcaaaaagagtttggaaacggttagcattaaagaaaaaagggttctcttgatcat---gatcggat |
30290119 |
T |
|
| Q |
202 |
ctagaagatacacaaactgaggccaggnnnnnnnttcccagcagcatcaaaagttgaaatagagctttgattgccataatgatttgaattattttcactt |
301 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30290118 |
ctagaagagacacaaactgaggctaggaaaaaaattcccagcagcatcaaaagttgaaatggagctttgattgccataatgatttgaattattttcactt |
30290019 |
T |
|
| Q |
302 |
tgctatgatgagagatgagatgagggagtattgagatcaaaggg---tatttataggaatagaaatggtagctatatgatta |
380 |
Q |
| |
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|| |||||||| |||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |
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| T |
30290018 |
tgatatgatga-----gagatgagtgagtattgagatgaaagggtactatttatagctttagaaatggtagctatatgatta |
30289942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 30313865 - 30313584
Alignment:
| Q |
2 |
catcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaagattctcaaatattttggaacgtttgtcaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
30313865 |
catcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaaaagtcgatagttttggagattctcaaatattttggaacgtttgtcaaa |
30313766 |
T |
|
| Q |
102 |
cctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaaatggttagcattaaagaaaaaagggttctcttgatcgtgtcgatcatct |
201 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| ||||||| ||| |||||||| ||||| | ||||| | |
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| T |
30313765 |
cctttggagaagccgaatgtgaccattttcgttctcaaaaagagtttgaaacctgttagagttaaagataaaggggttctcctgatc---ttgatcagat |
30313669 |
T |
|
| Q |
202 |
ctagaagatacacaaactgaggccaggnnnnnnnttcccagcagcatcaaaagttgaaatagagctttgattgccataatgattt |
286 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||| ||||||||||||||| | | ||||||||||||||||| |||||| |
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| T |
30313668 |
ctagaagagacacaaactgaggctaggaaaacagttccaagcagcatcaaaagtgaagaaggagctttgattgccatattgattt |
30313584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 30285358 - 30285077
Alignment:
| Q |
2 |
catcattgtgttgtggaagaaagagagtgtgaggtttggagtgatattccaaaaggcgatagttttgaagattctcaaatattttggaacgtttgtcaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
30285358 |
catcattgtgttgtggaagaaagagggtgtgaggtttggagtgatattccaagagtcggtagttttgaagattttcaaatattttggaacgtttgtcaaa |
30285259 |
T |
|
| Q |
102 |
cctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaaatggttagcattaaagaaaaaagggttctcttgatcgtgtcgatcatct |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| ||| |||||||| ||||| | ||||| | |
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|
| T |
30285258 |
cctttggaggagacgaatgtgaccattttcattctcaaaaagagtttgaaacctgttagagttaaagataaaggggttctcctgatc---ttgatcagat |
30285162 |
T |
|
| Q |
202 |
ctagaagatacacaaactgaggccaggnnnnnnnttcccagcagcatcaaaagttgaaatagagctttgattgccataatgattt |
286 |
Q |
| |
|
|||||||| ||||||| |||||| ||| |||| ||||||||||||||| | | ||||||||||||||||| |||||| |
|
|
| T |
30285161 |
ctagaagagacacaaattgaggctaggaatacaattccaagcagcatcaaaagtgaacaaggagctttgattgccatattgattt |
30285077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 46808771 - 46808707
Alignment:
| Q |
88 |
gaacgtttgtcaaacctttggaggagacgaatgtgaccattttcgttctcaaaaagagtttggaa |
152 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
46808771 |
gaacgtttgtcaaacctttggatgagacgaatgtgaccattttcgttctcaaagagtgtttggaa |
46808707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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