View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3474_high_6 (Length: 291)
Name: NF3474_high_6
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3474_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 24283304 - 24283065
Alignment:
| Q |
13 |
taggttcacaacaaaaatcctactttcaacagtctaaaaccctagcactagctaaaactaaactatggatcttacattactaccctttaaaaagaagttg |
112 |
Q |
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| T |
24283304 |
taggttcacgacaaaaatcctactttcaacagtctaaaaccctagcactagctaaaactaaactatggatcttacattactaccctttaaaaagaagtcg |
24283205 |
T |
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| Q |
113 |
cgtcctcaaggtgtcgatgaacaacccatggtataattttatcatcttgctttccatcccccaagtcgcattcctcgggtttggttctaattaactttca |
212 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24283204 |
cgtcctcaaggtgtcaatgaataacccatggtataattttatcatcttgctttccatcccccaagtcgcattcctcgggtttgtttctaattaactttca |
24283105 |
T |
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| Q |
213 |
acaatggtg----tttatttctcaacgtcatcgctttgta |
248 |
Q |
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|||||||| ||||||||||||||||||| ||||||| |
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| T |
24283104 |
acaatggtacttctttatttctcaacgtcatcactttgta |
24283065 |
T |
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