View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3474_high_8 (Length: 280)
Name: NF3474_high_8
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3474_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4857706 - 4857969
Alignment:
| Q |
1 |
aatgaattacttacttacaaaatttgatgtattaagaatgagggttgtaagctattacttgtattctattaaagtagcattttacaaagattttaacaaa |
100 |
Q |
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| T |
4857706 |
aatgaattacttacttacaaaatttgatgtattaagaatgagggttgtaagctattacttgtattctattaaagtagcattttacaaagattttaacaaa |
4857805 |
T |
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| Q |
101 |
gaaataatcatgtcctgagcaaaaaccagatcagctcttaacagtttaagcggttccatgacaaaatcgtttatacatttgttccaagaagctggtccgt |
200 |
Q |
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| T |
4857806 |
gaaataatcatgtcctgagcgaaaaccagatcagctcttaacagtttatgcggttccatgagaaaatcgtttatacatttgttccaagaagctggtccga |
4857905 |
T |
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| Q |
201 |
gcggctataattgaatgattttaacaactatgttcaattatttgttagatttgcaagagaatag |
264 |
Q |
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| T |
4857906 |
gcggctataattgaacgattttaacaactatgttcaattatttgttagatttgcaagagaatag |
4857969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 5176867 - 5176813
Alignment:
| Q |
212 |
tgaatgattttaacaactatgttcaattatttgttagatttgcaagagaatagtg |
266 |
Q |
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| T |
5176867 |
tgaacgattttaacaactatgctcaattatttgtttgattttcaagagaatagtg |
5176813 |
T |
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