View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3474_high_9 (Length: 273)
Name: NF3474_high_9
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3474_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 34605894 - 34605651
Alignment:
| Q |
18 |
attcaccgtatcagaattggttttcagttatatcatatatagcgtataacaacttgcatgtctttttttccttaaaaaaacgtgcataatctaatttgtn |
117 |
Q |
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| T |
34605894 |
attcaccgtaacagaattggttttcagttatattatatatagcgcataacaacttgcatgtctagttttccttaaaaagacgtgcataatctaatttgta |
34605795 |
T |
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| Q |
118 |
nnnnnnnnnnntctaattaaataataatctaagaaaagagacataacataattcaggataggaaataaattaaaccataaaattcgaaaagagtaataat |
217 |
Q |
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| T |
34605794 |
aaaaaaaaaaaga-aattaaataataatctaagaaaagagaaataacttaattcaggataggaaataaattaaaccataaaattcgaaaagagtaataat |
34605696 |
T |
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| Q |
218 |
taattgtaatcaagtgcaactctacttactcatagaattcttcat |
262 |
Q |
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| T |
34605695 |
taattgtaatcaagtgcaactctacttactcatagaattcttcat |
34605651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 27758358 - 27758425
Alignment:
| Q |
177 |
aggaaataaattaaaccataaaattcgaaaagagtaataattaattgtaatcaagtgcaactctactt |
244 |
Q |
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| T |
27758358 |
aggaaataaactaaaccataaaattagaaaaaggaaataacttaatgtaatcaagttcaactctactt |
27758425 |
T |
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