View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3474_low_5 (Length: 325)

Name: NF3474_low_5
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3474_low_5
NF3474_low_5
[»] chr8 (33 HSPs)
chr8 (11-309)||(32424693-32424989)
chr8 (16-72)||(13422215-13422271)
chr8 (16-72)||(27886197-27886253)
chr8 (16-72)||(27944855-27944911)
chr8 (16-72)||(28876621-28876677)
chr8 (16-72)||(2872965-2873021)
chr8 (16-72)||(22201392-22201448)
chr8 (16-72)||(32877444-32877500)
chr8 (16-72)||(34901437-34901493)
chr8 (16-72)||(36483442-36483498)
chr8 (16-71)||(32759381-32759436)
chr8 (16-74)||(19436279-19436337)
chr8 (16-74)||(19572428-19572486)
chr8 (16-70)||(32638911-32638965)
chr8 (18-72)||(43771761-43771815)
chr8 (19-72)||(6028494-6028547)
chr8 (16-72)||(4245947-4246003)
chr8 (16-72)||(16384624-16384680)
chr8 (16-72)||(27968110-27968166)
chr8 (16-72)||(28025096-28025152)
chr8 (11-74)||(37372264-37372327)
chr8 (16-70)||(19948051-19948105)
chr8 (16-72)||(5539442-5539497)
chr8 (16-72)||(5818366-5818422)
chr8 (16-72)||(38388674-38388730)
chr8 (16-72)||(45217275-45217331)
chr8 (16-69)||(25022135-25022188)
chr8 (16-69)||(40412445-40412498)
chr8 (24-72)||(20182381-20182429)
chr8 (16-74)||(7411641-7411699)
chr8 (19-72)||(12580611-12580664)
chr8 (35-72)||(28737262-28737299)
chr8 (23-72)||(37668589-37668638)
[»] scaffold0037 (1 HSPs)
scaffold0037 (16-72)||(27836-27892)
[»] chr5 (28 HSPs)
chr5 (16-72)||(1639837-1639893)
chr5 (16-72)||(30918385-30918441)
chr5 (16-74)||(30284662-30284720)
chr5 (18-74)||(6243215-6243271)
chr5 (16-72)||(32707886-32707942)
chr5 (16-72)||(39690818-39690874)
chr5 (18-72)||(12852126-12852180)
chr5 (18-72)||(33829760-33829814)
chr5 (16-70)||(41392767-41392821)
chr5 (19-80)||(11906218-11906278)
chr5 (16-72)||(10656827-10656883)
chr5 (16-72)||(30777577-30777633)
chr5 (16-71)||(26716281-26716336)
chr5 (16-71)||(26986021-26986076)
chr5 (19-72)||(17138312-17138364)
chr5 (11-72)||(26691623-26691684)
chr5 (11-72)||(26961355-26961416)
chr5 (16-72)||(1795399-1795455)
chr5 (18-70)||(26795050-26795102)
chr5 (18-74)||(27938168-27938224)
chr5 (16-83)||(3934843-3934909)
chr5 (19-70)||(14836390-14836441)
chr5 (16-74)||(32728764-32728822)
chr5 (16-74)||(42366158-42366216)
chr5 (16-72)||(9792326-9792382)
chr5 (19-71)||(22774562-22774614)
chr5 (16-74)||(35746306-35746364)
chr5 (16-72)||(32624884-32624940)
[»] chr4 (26 HSPs)
chr4 (16-72)||(38492314-38492370)
chr4 (16-72)||(52122924-52122980)
chr4 (16-74)||(5834835-5834893)
chr4 (16-72)||(5325776-5325832)
chr4 (16-72)||(8064164-8064220)
chr4 (16-72)||(19738704-19738760)
chr4 (16-72)||(41145619-41145675)
chr4 (18-72)||(14795030-14795084)
chr4 (18-72)||(42472626-42472680)
chr4 (16-72)||(28377003-28377059)
chr4 (16-72)||(46431988-46432044)
chr4 (18-72)||(36511991-36512045)
chr4 (19-69)||(52721274-52721324)
chr4 (18-71)||(31946262-31946315)
chr4 (16-72)||(40694077-40694133)
chr4 (17-72)||(53322344-53322399)
chr4 (19-69)||(3403633-3403683)
chr4 (19-73)||(44522035-44522089)
chr4 (18-72)||(51674865-51674919)
chr4 (18-72)||(55901196-55901250)
chr4 (16-69)||(44121897-44121950)
chr4 (16-72)||(1176988-1177044)
chr4 (16-72)||(2586343-2586399)
chr4 (18-70)||(36561771-36561822)
chr4 (18-74)||(37992590-37992646)
chr4 (24-72)||(47607117-47607165)
[»] scaffold0112 (1 HSPs)
scaffold0112 (18-72)||(42122-42176)
[»] chr3 (38 HSPs)
chr3 (18-72)||(48122832-48122886)
chr3 (16-72)||(7327719-7327775)
chr3 (16-72)||(35389757-35389813)
chr3 (16-72)||(42464962-42465018)
chr3 (18-72)||(40497337-40497391)
chr3 (16-69)||(19879148-19879201)
chr3 (16-72)||(1679753-1679809)
chr3 (18-70)||(6134439-6134491)
chr3 (16-72)||(22611429-22611485)
chr3 (16-72)||(28704734-28704790)
chr3 (16-72)||(41742127-41742183)
chr3 (16-72)||(55269067-55269123)
chr3 (16-71)||(22289776-22289831)
chr3 (19-74)||(28882736-28882791)
chr3 (16-74)||(42229679-42229737)
chr3 (23-72)||(19420912-19420961)
chr3 (11-72)||(29915868-29915929)
chr3 (11-72)||(29965021-29965082)
chr3 (18-71)||(47642025-47642078)
chr3 (18-70)||(10225208-10225260)
chr3 (16-72)||(13748502-13748558)
chr3 (16-72)||(22310712-22310768)
chr3 (16-72)||(37996866-37996922)
chr3 (24-72)||(52121187-52121235)
chr3 (16-72)||(53192505-53192561)
chr3 (16-74)||(1528507-1528565)
chr3 (18-72)||(2567444-2567498)
chr3 (16-74)||(52684206-52684264)
chr3 (16-69)||(30226430-30226483)
chr3 (19-68)||(47750948-47750997)
chr3 (16-69)||(49419245-49419298)
chr3 (37-72)||(2122711-2122746)
chr3 (17-72)||(52505889-52505943)
chr3 (18-72)||(30787619-30787673)
chr3 (16-69)||(5271489-5271542)
chr3 (23-71)||(7899781-7899829)
chr3 (19-71)||(13353244-13353296)
chr3 (16-72)||(28968517-28968573)
[»] chr2 (30 HSPs)
chr2 (16-74)||(4170557-4170615)
chr2 (18-72)||(20536782-20536836)
chr2 (11-72)||(6497699-6497760)
chr2 (16-72)||(7876721-7876777)
chr2 (16-72)||(38602377-38602433)
chr2 (19-74)||(14217212-14217267)
chr2 (16-70)||(1005522-1005576)
chr2 (16-72)||(28746707-28746763)
chr2 (16-72)||(33324825-33324881)
chr2 (16-72)||(35342324-35342380)
chr2 (18-72)||(2319282-2319336)
chr2 (18-72)||(3563858-3563912)
chr2 (18-72)||(6124180-6124234)
chr2 (16-72)||(7807429-7807485)
chr2 (16-72)||(16561807-16561863)
chr2 (16-72)||(40308952-40309008)
chr2 (16-71)||(4355333-4355388)
chr2 (11-70)||(18300981-18301040)
chr2 (16-71)||(35996651-35996706)
chr2 (16-70)||(22570946-22571000)
chr2 (11-72)||(24585537-24585597)
chr2 (23-72)||(31236248-31236297)
chr2 (16-72)||(1776491-1776547)
chr2 (16-74)||(4561793-4561851)
chr2 (16-74)||(5588112-5588170)
chr2 (18-72)||(44156604-44156658)
chr2 (19-72)||(8482975-8483028)
chr2 (19-72)||(22484274-22484327)
chr2 (16-69)||(40536252-40536305)
chr2 (23-72)||(45159360-45159409)
[»] chr1 (30 HSPs)
chr1 (16-70)||(36367747-36367801)
chr1 (16-72)||(6916929-6916985)
chr1 (16-72)||(20409609-20409665)
chr1 (16-72)||(28949296-28949352)
chr1 (16-72)||(37104127-37104183)
chr1 (16-72)||(37346903-37346959)
chr1 (16-72)||(38330434-38330490)
chr1 (16-72)||(52895768-52895824)
chr1 (16-74)||(2472909-2472967)
chr1 (18-72)||(3426855-3426909)
chr1 (18-72)||(5984234-5984288)
chr1 (16-69)||(1036469-1036522)
chr1 (16-72)||(1043234-1043290)
chr1 (18-74)||(8132188-8132244)
chr1 (16-80)||(29167947-29168010)
chr1 (16-72)||(43189662-43189718)
chr1 (19-74)||(38948737-38948792)
chr1 (23-70)||(40776004-40776051)
chr1 (16-70)||(9781651-9781705)
chr1 (24-74)||(34432446-34432496)
chr1 (18-72)||(3708336-3708390)
chr1 (16-70)||(25256625-25256679)
chr1 (19-71)||(14167092-14167144)
chr1 (16-72)||(33039620-33039676)
chr1 (16-70)||(2364686-2364740)
chr1 (16-65)||(9528894-9528943)
chr1 (19-72)||(34096610-34096663)
chr1 (23-71)||(10822410-10822458)
chr1 (18-70)||(28659357-28659409)
chr1 (16-72)||(41676044-41676100)
[»] chr6 (18 HSPs)
chr6 (13-74)||(31079617-31079678)
chr6 (16-72)||(1036881-1036937)
chr6 (16-72)||(27083992-27084048)
chr6 (16-70)||(8356967-8357021)
chr6 (16-69)||(31195924-31195977)
chr6 (19-70)||(32017986-32018037)
chr6 (16-70)||(13607840-13607894)
chr6 (16-72)||(234313-234369)
chr6 (16-72)||(26327162-26327218)
chr6 (16-70)||(3299150-3299204)
chr6 (16-72)||(6708096-6708152)
chr6 (16-72)||(32130714-32130770)
chr6 (19-70)||(29892975-29893026)
chr6 (16-72)||(7188834-7188887)
chr6 (16-70)||(10894628-10894681)
chr6 (18-72)||(25834553-25834607)
chr6 (19-72)||(3212484-3212537)
chr6 (16-73)||(31741211-31741268)
[»] chr7 (30 HSPs)
chr7 (16-72)||(25969401-25969457)
chr7 (16-72)||(40095654-40095710)
chr7 (18-72)||(39520804-39520858)
chr7 (18-72)||(42897006-42897060)
chr7 (19-72)||(11829693-11829746)
chr7 (16-72)||(1043126-1043182)
chr7 (16-68)||(9250477-9250529)
chr7 (16-72)||(27353925-27353981)
chr7 (16-72)||(34238162-34238218)
chr7 (18-74)||(35159867-35159923)
chr7 (20-72)||(36202837-36202889)
chr7 (16-72)||(48163412-48163468)
chr7 (11-74)||(44960185-44960248)
chr7 (18-72)||(16564415-16564469)
chr7 (18-72)||(16601193-16601247)
chr7 (16-70)||(27398102-27398156)
chr7 (16-70)||(34122672-34122726)
chr7 (19-68)||(11058360-11058409)
chr7 (16-72)||(4291516-4291572)
chr7 (19-72)||(33454074-33454127)
chr7 (16-72)||(23079095-23079151)
chr7 (16-72)||(38263003-38263059)
chr7 (24-72)||(44269730-44269778)
chr7 (16-72)||(47238662-47238718)
chr7 (16-71)||(26845951-26846006)
chr7 (18-72)||(19510527-19510581)
chr7 (16-70)||(27555424-27555478)
chr7 (16-69)||(21409398-21409451)
chr7 (19-72)||(26773770-26773823)
chr7 (16-72)||(554935-554991)
[»] scaffold0285 (1 HSPs)
scaffold0285 (16-74)||(13255-13313)
[»] scaffold0005 (1 HSPs)
scaffold0005 (18-72)||(44647-44701)
[»] scaffold0640 (1 HSPs)
scaffold0640 (16-72)||(8147-8203)
[»] scaffold0250 (1 HSPs)
scaffold0250 (16-72)||(5519-5575)
[»] scaffold0177 (1 HSPs)
scaffold0177 (18-72)||(25587-25641)
[»] scaffold0406 (1 HSPs)
scaffold0406 (24-72)||(13873-13921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (16-72)||(30499-30555)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 32424989 - 32424693
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggaggctttatagttaaaagggaaagnnnnnnntttatgt 110  Q
    |||| |||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||||| |||  ||||||||||||       |||||||    
T  32424989 cagacaggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggaggcttcata--taaaagggaaagaaaaaaatttatgt 32424892  T
Q  111 gagtcatttactaaaataaatgccatgttaccgaactacatgccaattttgcctaaaaataaacattccatttaactcgtcaaatgcctaaaaataaaca 210  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  32424891 gagtcatttactaaaataaatgccatgttactgaactacatgccaattttgcctaaaaataaacatttcatttaactcatcaaatgcctaaaaataaaca 32424792  T
Q  211 tgtcatttaactcatcaaaattacatgtaatttgggcgtaagtatatgaacttatgaaatatgaactagtgatatactagtgttgtaagtatccaaggt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32424791 tgtcatttaactcatcaaaattacatgtaatttgggcgtaagtatatgcacttatgaaatatgaactagtgatatactagtgtcgtaagtatccaaggt 32424693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 13422271 - 13422215
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  13422271 aggtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcgg 13422215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27886253 - 27886197
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27886253 aggtatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgg 27886197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27944911 - 27944855
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27944911 aggtatcggtgcaggatatgcagggaatacaatacgtcatccattttgaagtatcgg 27944855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 28876621 - 28876677
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  28876621 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcgg 28876677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 2872965 - 2873021
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  2872965 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 2873021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 22201392 - 22201448
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  22201392 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 22201448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 32877500 - 32877444
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  32877500 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 32877444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 34901437 - 34901493
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  34901437 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 34901493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 36483498 - 36483442
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  36483498 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 36483442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 32759436 - 32759381
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  32759436 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcg 32759381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 19436337 - 19436279
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||    
T  19436337 aggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggag 19436279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 19572486 - 19572428
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||||    
T  19572486 aggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcggag 19572428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 32638911 - 32638965
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  32638911 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 32638965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 43771761 - 43771815
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  43771761 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 43771815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6028547 - 6028494
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  6028547 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 6028494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 4246003 - 4245947
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||    
T  4246003 aggtatcggtgcaggatatgcaggggatacggtacgtcatctattttgaagcatcgg 4245947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 16384680 - 16384624
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||    
T  16384680 aggtatcggtgcaggatactcaggggatacggtacgtcatccattttgaagtatcgg 16384624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27968166 - 27968110
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||    
T  27968166 aggtatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgg 27968110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28025152 - 28025096
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||    
T  28025152 aggtatcggtgcaggatatgcagggaatacaatacgtcatctatttttaagtatcgg 28025096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 37372327 - 37372264
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||| ||||||| |||||||||| ||||| |||||  |||||||||||||||||||||||||||    
T  37372327 cagacaggtatcagtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggag 37372264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 19948051 - 19948105
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| ||||||||||   |||||||||||||||||||||||    
T  19948051 aggtatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtatc 19948105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 5539497 - 5539442
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||    
T  5539497 aggtatcggtgcaggatacgcaggg-atacagtacatcatccattttgaagtatcgg 5539442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 5818366 - 5818422
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| ||| | |||||  |||||||||||||||||||||||||    
T  5818366 aggtatcggtgcaggatacgcaagtgatacgatacgtcatccattttgaagtatcgg 5818422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 38388730 - 38388674
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||| ||||||| |||  ||||||||||||||||||||    
T  38388730 aggtatcggtgcaggatacgcagaggatacaatacagcatccattttgaagtatcgg 38388674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 45217275 - 45217331
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||| ||  ||||||||||| |||||||||    
T  45217275 aggtatcggtgcaggatacgcaggggatacaatatatcatccattttaaagtatcgg 45217331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25022188 - 25022135
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||||||||||| ||||| |||||  || |||||||||||||||||||    
T  25022188 aggtatcggtgcaggatacgcaggagatacggtatgtcatccattttgaagtat 25022135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 40412498 - 40412445
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    ||||| |||||||||||| |||||||||||  ||| ||||||||||||||||||    
T  40412498 aggtaacggtgcaggatacgcaggggatacgatacatcatccattttgaagtat 40412445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 20182429 - 20182381
Alignment:
Q  24 gtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||||||    
T  20182429 gtgcaggatatgcacgggataccgtacgtcatccatcttgaagtatcgg 20182381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 7411699 - 7411641
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||| |||||||||  ||| ||||||  |||| ||||||||||||||||||||||    
T  7411699 aggtatcgatgcaggatacacagtggatacgatacgccatccattttgaagtatcggag 7411641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 12580611 - 12580664
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||| ||||| |||||  ||| ||||| |||||||||||||||    
T  12580611 tatcggtgcaggatacgcaggagatacggtacatcatctattttgaagtatcgg 12580664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 28737299 - 28737262
Alignment:
Q  35 gcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  28737299 gcaggggatacaatacgtcatccattttgaaatatcgg 28737262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 37668638 - 37668589
Alignment:
Q  23 ggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||| |||| |||||| ||||  |||||||||||||||||||||||||    
T  37668638 ggtgcaagatacgcagggaatacggtacgtcatccattttgaagtatcgg 37668589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 27836 - 27892
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  27836 aggtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcgg 27892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1639837 - 1639893
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1639837 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcgg 1639893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 30918441 - 30918385
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  30918441 aggtatcggtgcaggatacgcaggggatacaatacgtcatccattttgaagtatcgg 30918385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 30284662 - 30284720
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  30284662 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggag 30284720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 6243215 - 6243271
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  6243215 gtatcggtgcaggatacgcagaggatacaatacgtcatccattttgaagtatcggag 6243271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 32707886 - 32707942
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  32707886 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 32707942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 39690818 - 39690874
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  39690818 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 39690874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 12852180 - 12852126
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  12852180 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 12852126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 33829814 - 33829760
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  33829814 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 33829760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 41392767 - 41392821
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  41392767 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 41392821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 11906278 - 11906218
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggaggcttta 80  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||    
T  11906278 tatcggtgcaggatacgcagggaatacaatacgtcatccattttgaagtatc-gaggcttta 11906218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 10656883 - 10656827
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||| |||||||||    
T  10656883 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatcgg 10656827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 30777577 - 30777633
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||    
T  30777577 aggtatcggtgcaggatacgcaagggatacgatacgtcatccattttgaagtatcgg 30777633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 26716336 - 26716281
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    ||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||    
T  26716336 aggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcg 26716281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 26986076 - 26986021
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    ||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||    
T  26986076 aggtatcggtgtaggatacgcaggggatacgatacgtcatccattttgaagtatcg 26986021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 17138312 - 17138364
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||    
T  17138312 tatcggtgcaggatacgcaggggataca-tacgtcatctattttgaagtatcgg 17138364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 26691684 - 26691623
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| |||||||||||||| ||| |||||||||||  ||||||||| |||||||||||||||    
T  26691684 cagacaggtatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcgg 26691623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 26961416 - 26961355
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| |||||||||||||| ||| |||||||||||  ||||||||| |||||||||||||||    
T  26961416 cagacaggtatcggtgcagaatacgcaggggatacgatacgtcatctattttgaagtatcgg 26961355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 1795455 - 1795399
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| | |||||||||  ||||||| |||||||||||||||||    
T  1795455 aggtatcggtgcaggatacggaggggatacgatacgtcaaccattttgaagtatcgg 1795399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 26795050 - 26795102
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||| |||||||||||  ||||||||||||||| |||||||    
T  26795050 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatc 26795102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 27938224 - 27938168
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||||||||| |||| ||| | |||||| |||||||||||||||||||||||||||    
T  27938224 gtatcggtgcatgatacgcatgagatacaatacgtcatccattttgaagtatcggag 27938168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 3934843 - 3934909
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggaggctttatag 83  Q
    |||||||||||| ||||| |||||||||| | ||||||||||||||| |||||| |||||||| ||||    
T  3934843 aggtatcggtgcgggatacgcaggggatataatacgtcatccattttaaagtat-ggaggcttcatag 3934909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 14836441 - 14836390
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||| ||||||||| |||||||||||| ||||||| |||||||||||||||    
T  14836441 tatcgatgcaggatacgcaggggatacaatacgtcaaccattttgaagtatc 14836390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 32728764 - 32728822
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||| |||| |||| |||||||||||| ||| ||||| |||||||||||||||||    
T  32728764 aggtatcgatgcaagatacgcaggggatacaatacatcatcaattttgaagtatcggag 32728822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 42366158 - 42366216
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||||| |||||||||| |||||||||||| ||| ||||| |||||||||||| ||||    
T  42366158 aggtatcagtgcaggatacgcaggggatacagtacatcatctattttgaagtattggag 42366216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 9792382 - 9792326
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| |||||||||  ||||||||||  ||||||||||||||| |||||||||    
T  9792382 aggtatcgatgcaggatacacaggggatacggtacgtcatccattttaaagtatcgg 9792326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 22774614 - 22774562
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||||||||||||||||||||||||  |||| || ||||||| ||||||||    
T  22774614 tatcggtgcaggatatgcaggggatacgatacgccaaccattttaaagtatcg 22774562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 35746306 - 35746364
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||| |||| |||| | ||| |||||| ||||||||| |||||||||||||||||    
T  35746306 aggtatcgatgcatgatacgtaggagatacaatacgtcatctattttgaagtatcggag 35746364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 32624940 - 32624884
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| |||| ||||  ||||||||||  |||||||||||||||||| ||||||    
T  32624940 aggtatcgatgcaagatacacaggggatacggtacgtcatccattttgaaatatcgg 32624884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 38492314 - 38492370
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  38492314 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcgg 38492370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 52122924 - 52122980
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  52122924 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcgg 52122980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 5834893 - 5834835
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  5834893 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggag 5834835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 5325776 - 5325832
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
T  5325776 aggtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcgg 5325832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 8064164 - 8064220
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  8064164 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 8064220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 19738760 - 19738704
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  19738760 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 19738704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 41145675 - 41145619
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  41145675 aggtatcgatgcaggatacgcaggggatacagtacgtcatccattttgaagtatcgg 41145619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 14795084 - 14795030
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  14795084 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 14795030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 42472626 - 42472680
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||||||||||||    
T  42472626 gtatcggtgcaggatacgcagggaatacagtacgtcatccattttgaagtatcgg 42472680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28377059 - 28377003
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||  |||| |||||  |||||||||||||||||||||||||    
T  28377059 aggtatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcgg 28377003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 46431988 - 46432044
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| |||||||||||||| ||||||  |||||||||| ||||||||||||||    
T  46431988 aggtatcgttgcaggatatgcagaggatacgatacgtcatccgttttgaagtatcgg 46432044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 36511991 - 36512045
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||| |||||||| ||| |||||||| ||||||| |||||||||||||||||    
T  36511991 gtatcggcgcaggatacgcacgggatacaatacgtcaaccattttgaagtatcgg 36512045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 52721324 - 52721274
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    ||||||||||||||| |||||||||||  ||||||||| ||||||||||||    
T  52721324 tatcggtgcaggatacgcaggggatacgatacgtcatctattttgaagtat 52721274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 31946262 - 31946315
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||||||||||||| |||||| ||||  ||||||||||||||| ||||||||    
T  31946262 gtatcggtgcaggatacgcagggaatacgatacgtcatccattttaaagtatcg 31946315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 40694133 - 40694077
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||| ||| ||| |||||||  ||| |||||||||||||||||||||    
T  40694133 aggtatcggtgcagaatacgcatgggatacgatacatcatccattttgaagtatcgg 40694077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 53322399 - 53322344
Alignment:
Q  17 ggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||| |||||||||| |||  ||||||  |||||||||||||||||||||||||    
T  53322399 ggtatcagtgcaggatacgcaaaggatacgatacgtcatccattttgaagtatcgg 53322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 3403633 - 3403683
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||| ||||||||||  ||||||||||  ||||||||||||||||||||||    
T  3403633 tatcagtgcaggatacacaggggatacggtacgtcatccattttgaagtat 3403683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 44522035 - 44522089
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgga 73  Q
    ||||||||||| ||||||||| |||| | ||| ||||||||||||||||| ||||    
T  44522035 tatcggtgcagaatatgcaggagatataatacatcatccattttgaagtaccgga 44522089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 51674919 - 51674865
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||| |||||| ||||||||| |||||  ||||||||| |||||||||||||||    
T  51674919 gtatcagtgcagaatatgcaggagatacgatacgtcatctattttgaagtatcgg 51674865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 55901196 - 55901250
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||  ||||||||||  ||||||||| ||||| |||||||||    
T  55901196 gtatcggtgcaggatacacaggggatacgatacgtcatctattttaaagtatcgg 55901250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 44121897 - 44121950
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||||||||||| ||||  |||||  |||||| |||||||||||||||    
T  44121897 aggtatcggtgcaggatacgcagaagatacgatacgtcgtccattttgaagtat 44121950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 1177044 - 1176988
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||| ||||||||||| | |||||||||  ||||||| | |||||||||||||||    
T  1177044 aggtatgggtgcaggatacgtaggggatacgatacgtcaactattttgaagtatcgg 1176988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 2586399 - 2586343
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| |||||| ||||||  ||||||||||  ||||||||||||||| |||||||||    
T  2586399 aggtgtcggtgaaggatactcaggggatacggtacgtcatccattttaaagtatcgg 2586343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 36561771 - 36561822
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||||||||||||  | ||||||||| || ||||||||||||||||||||    
T  36561771 gtatcggtgcaggatacac-ggggatacaataagtcatccattttgaagtatc 36561822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 37992590 - 37992646
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||||||||| |||  ||| |||||||| |||||| |||||||||||||| |||||    
T  37992590 gtatcggtgcaagatccgcaagggatacaatacgtcttccattttgaagtaccggag 37992646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 47607165 - 47607117
Alignment:
Q  24 gtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||| ||||| |||||  || ||||||||||||||||||||||    
T  47607165 gtgcaggatacgcaggagatacgatatgtcatccattttgaagtatcgg 47607117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 42122 - 42176
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  42122 gtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatcgg 42176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 48122886 - 48122832
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  48122886 gtatcggtgcaggatatgcaggggatacggtacgtcatccattttgaagtatcgg 48122832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 7327775 - 7327719
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  7327775 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 7327719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 35389813 - 35389757
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  35389813 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 35389757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 42464962 - 42465018
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  42464962 aggtatcggtgcaggatacgcagaggatacagtacgtcatccattttgaagtatcgg 42465018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 40497391 - 40497337
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  40497391 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 40497337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 19879148 - 19879201
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  19879148 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 19879201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1679753 - 1679809
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||    
T  1679753 aggtatcggtgcaggatatgcagtggatacggtacgttatccattttgaagtatcgg 1679809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 6134439 - 6134491
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  6134439 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatc 6134491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 22611429 - 22611485
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| | |||||||||||  |||||||||||||||||||||||||    
T  22611429 aggtatcggtgcaggaaacgcaggggatacggtacgtcatccattttgaagtatcgg 22611485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28704790 - 28704734
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  28704790 aggtatcagtgcaggatatgcaggggatacggtacgtcatccattttaaagtatcgg 28704734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 41742127 - 41742183
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||  ||| ||||||| |||||||||||||||||||||||||    
T  41742127 aggtatcggtgcaggatacacagaggatacaatacgtcatccattttgaagtatcgg 41742183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 55269067 - 55269123
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| ||||||||| |||||||||||  |||||||||||||||||||||||||    
T  55269067 aggtatcgatgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 55269123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 22289776 - 22289831
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  22289776 aggtattggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcg 22289831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 28882736 - 28882791
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||| |||| |||||||||||  |||||||||||||||||||||||||||    
T  28882736 tatcggtgcatgatacgcaggggatacggtacgtcatccattttgaagtatcggag 28882791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 42229737 - 42229679
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| |||||||||| | ||||||||| |||||||||||| ||||    
T  42229737 aggtatcggtgcaggatacgcaggggatataatacgtcatctattttgaagtattggag 42229679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 19420961 - 19420912
Alignment:
Q  23 ggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  19420961 ggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 19420912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 29915929 - 29915868
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| ||||||||||||| |||| |||||||||||  ||||||||| |||||||||||||||    
T  29915929 cagacaggtatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgg 29915868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 29965082 - 29965021
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| ||||||||||||| |||| |||||||||||  ||||||||| |||||||||||||||    
T  29965082 cagacaggtatcggtgcatgatacgcaggggatacgatacgtcatctattttgaagtatcgg 29965021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 47642078 - 47642025
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||||||||||||| ||| |||||||  ||||||||||||||||||||||||    
T  47642078 gtatcggtgcaggatacgcatgggatacggtacgtcatccattttgaagtatcg 47642025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 10225208 - 10225260
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||| |||||||||||  ||||||||||||||| |||||||    
T  10225208 gtatcggtgcaggatacgcaggggatacgatacgtcatccattttaaagtatc 10225260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 13748502 - 13748558
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||| ||||||  ||||||| |||||||||||||||||    
T  13748502 aggtatcggtgcaggatacgcagaggatacgatacgtcaaccattttgaagtatcgg 13748558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 22310768 - 22310712
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||  ||||||||||  ||||||||||||| |||||||||||    
T  22310768 aggtatcggtgcaggatacacaggggatacggtacgtcatccattgtgaagtatcgg 22310712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 37996866 - 37996922
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| ||||||||||||| |||||||||||  ||||||||||||||| |||||||||    
T  37996866 aggtctcggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcgg 37996922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 52121235 - 52121187
Alignment:
Q  24 gtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||| |||||||||||  |||||||||||||||||||||||||    
T  52121235 gtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 52121187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 53192561 - 53192505
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||  ||||| ||||  |||||||||||||||||||||||||    
T  53192561 aggtatcggtgcaggatactcagggtatacggtacgtcatccattttgaagtatcgg 53192505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 1528565 - 1528507
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||| |||| |||| ||||||||||   |||||||||||||||||||||||||||    
T  1528565 aggtatcgatgcatgatacgcaggggatatgatacgtcatccattttgaagtatcggag 1528507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 2567444 - 2567498
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||  ||||  |||||||||||||||||||||||||    
T  2567444 gtatcggtgcaggatacgcaggaaatacgatacgtcatccattttgaagtatcgg 2567498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 52684264 - 52684206
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| ||| | |||||  ||||||||| |||||||||||||||||    
T  52684264 aggtatcggtgcaggatacgcatgagatacgatacgtcatctattttgaagtatcggag 52684206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 30226483 - 30226430
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||||||||||| |||| ||||||  || |||||||||||||||||||    
T  30226483 aggtatcggtgcaggatacgcagaggatacgataagtcatccattttgaagtat 30226430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 47750948 - 47750997
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagta 68  Q
    ||||||||||||||| |||| ||||| | |||||||||||||||||||||    
T  47750948 tatcggtgcaggatacgcagaggatatagtacgtcatccattttgaagta 47750997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 49419298 - 49419245
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||| ||||||||| ||| |||||||  ||||||||||||||||||||||    
T  49419298 aggtatcgatgcaggatacgcaagggatacgatacgtcatccattttgaagtat 49419245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 2122746 - 2122711
Alignment:
Q  37 aggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||| |||||||||||||||||||||||||    
T  2122746 aggggatacaatacgtcatccattttgaagtatcgg 2122711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 52505889 - 52505943
Alignment:
Q  17 ggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||| |||||| ||||| ||| ||||||||||| |||||||||    
T  52505889 ggtatcggtgcaggatacgcaggg-atacagtacatcatccatttttaagtatcgg 52505943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 30787619 - 30787673
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||| || ||||||| |||||||||||  ||||||||| |||||||||||||||    
T  30787619 gtatcagtacaggatacgcaggggatacgatacgtcatcgattttgaagtatcgg 30787673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 5271542 - 5271489
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||| ||||||| ||| |||||||| || |||||| ||||||||||||    
T  5271542 aggtatcggttcaggatacgcaagggatacagtatgtcatctattttgaagtat 5271489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 7899781 - 7899829
Alignment:
Q  23 ggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    ||||||||||| | | | |||||||| ||||||||||||||||||||||    
T  7899781 ggtgcaggatacgtaagagatacatttcgtcatccattttgaagtatcg 7899829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 13353244 - 13353296
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||| |||||||| ||||| |||||  ||||||||||||||| ||||||||    
T  13353244 tatcggcgcaggatacgcaggagatacgatacgtcatccattttaaagtatcg 13353296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 28968573 - 28968517
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| | |  |||||   |||||||||||||||||||||||||    
T  28968573 aggtatcggtgcaggatacgtaaaggatatggtacgtcatccattttgaagtatcgg 28968517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 4170557 - 4170615
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  4170557 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcggag 4170615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 20536836 - 20536782
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  20536836 gtatcggtgcaggatatgcaggggatacgatacgtcatccattttgaagtatcgg 20536782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 6497699 - 6497760
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  6497699 cagacaggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 6497760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 7876777 - 7876721
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  7876777 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 7876721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 38602377 - 38602433
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  38602377 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 38602433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 14217212 - 14217267
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||    
T  14217212 tatcggtgcagaatacgcaggggatacaatacgtcatccattttgaagtatcggag 14217267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 1005576 - 1005522
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  1005576 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatc 1005522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 28746707 - 28746763
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||    
T  28746707 aggtatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatcgg 28746763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 33324881 - 33324825
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||    
T  33324881 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcgg 33324825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 35342380 - 35342324
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| ||| |||||||  |||||||||||||||||||||||||    
T  35342380 aggtatcggtgcaggatacgcaagggatacggtacgtcatccattttgaagtatcgg 35342324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 2319336 - 2319282
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||| |||| |||||||||||  |||||||||||||||||||||||||    
T  2319336 gtatcggtgcaagatacgcaggggatacgatacgtcatccattttgaagtatcgg 2319282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 3563912 - 3563858
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||| |||||| ||||| |||||||||| |||||||||||||||||||||||||    
T  3563912 gtatcagtgcagaatatgtaggggatacaatacgtcatccattttgaagtatcgg 3563858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 6124234 - 6124180
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||  ||||||||||| ||||||||||||||| |||||||||    
T  6124234 gtatcggtgcaggatacacaggggatacaatacgtcatccattttaaagtatcgg 6124180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 7807429 - 7807485
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||| || |||| |||||||||||  |||||||||||||||||||||||||    
T  7807429 aggtatcggtacaagatacgcaggggatacgatacgtcatccattttgaagtatcgg 7807485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 16561863 - 16561807
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||| ||| ||| |||||||  |||||||||||||||||||||||||    
T  16561863 aggtatcggtgcagaatacgcaagggatacggtacgtcatccattttgaagtatcgg 16561807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 40308952 - 40309008
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| ||| |||||||  ||||||||| |||||||||||||||    
T  40308952 aggtatcggtgcaggatacgcatgggatacggtacgtcatctattttgaagtatcgg 40309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 4355388 - 4355333
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||||||||||| ||| |||||| ||||  ||||||||||||||||||||||||    
T  4355388 aggtatcggtgcagaatacgcagggaatacgatacgtcatccattttgaagtatcg 4355333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 18301040 - 18300981
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||| |||||||||||||| |||  ||||||||||  |||||||||||||||||||||||    
T  18301040 cagacaggtatcggtgcagaatacacaggggatacgatacgtcatccattttgaagtatc 18300981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 35996706 - 35996651
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    ||||||||||||| |||| |||||||||||| ||| |||| |||||||||||||||    
T  35996706 aggtatcggtgcaagatacgcaggggatacaatacatcattcattttgaagtatcg 35996651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 22571000 - 22570946
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||| ||||||  ||||||||| |||||||||||||    
T  22571000 aggtatcggtgcaggatacgcagaggatacggtacgtcatctattttgaagtatc 22570946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 24585597 - 24585537
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| |||||||||||||||||| |||||| ||||  ||| |||||||||||||||||||||    
T  24585597 cagacaggtatcggtgcaggatacgcaggg-atacgatacatcatccattttgaagtatcgg 24585537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 31236248 - 31236297
Alignment:
Q  23 ggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||| |||||||||||| ||||| ||||||||| |||||||||    
T  31236248 ggtgcaggatacgcaggggatacaatacgttatccattttaaagtatcgg 31236297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1776491 - 1776547
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||| ||| ||| |||||||  ||||||| |||||||||||||||||    
T  1776491 aggtatcggtgcagaatacgcaagggatacgatacgtcaaccattttgaagtatcgg 1776547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 4561851 - 4561793
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||||||||||||||||  || || ||||  |||||||||||||||||||||| ||||    
T  4561851 aggtatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtattggag 4561793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 5588170 - 5588112
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||||||||||| ||||   || ||||||  |||||||||||||||||||||||||||    
T  5588170 aggtatcggtgcaagatacaaagaggatacgatacgtcatccattttgaagtatcggag 5588112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 44156658 - 44156604
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||| |||| |||| |||||||||||  || ||||||||||||||||||||||    
T  44156658 gtatcgatgcatgatacgcaggggatacgatatgtcatccattttgaagtatcgg 44156604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 8482975 - 8483028
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||| |||  ||||||  |||||||| ||||||||||||||||    
T  8482975 tatcggtgcaggatacgcaaaggatacgatacgtcattcattttgaagtatcgg 8483028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 22484327 - 22484274
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||| ||||||||| |||||| ||||  ||| |||||||||||||||||||||    
T  22484327 tatcgatgcaggatacgcagggaatacggtacatcatccattttgaagtatcgg 22484274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 40536305 - 40536252
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||||||||||| ||| | |||||| ||||| | ||||||||||||||    
T  40536305 aggtatcggtgcaggatacgcatgtgatacagtacgttacccattttgaagtat 40536252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 45159360 - 45159409
Alignment:
Q  23 ggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||| |||| ||| |||||||  |||||||||||||||||||||||||    
T  45159360 ggtgcaagatacgcaagggatacgatacgtcatccattttgaagtatcgg 45159409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 36367747 - 36367801
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  36367747 aggtatcggtgcaggatacgcaggggatacagtacgtcatccattttgaagtatc 36367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 6916929 - 6916985
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  6916929 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 6916985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 20409609 - 20409665
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  20409609 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 20409665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 28949296 - 28949352
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  28949296 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 28949352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 37104183 - 37104127
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  37104183 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 37104127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 37346903 - 37346959
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  37346903 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 37346959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 38330490 - 38330434
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  38330490 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 38330434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 52895768 - 52895824
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  52895768 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 52895824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 2472909 - 2472967
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||    
T  2472909 aggtaccggtgcaggatatgcaggggatacgatacgtcatctattttgaagtatcggag 2472967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 3426909 - 3426855
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
T  3426909 gtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcgg 3426855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 5984288 - 5984234
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  5984288 gtatcggtgcagaatacgcaggggatacagtacgtcatccattttgaagtatcgg 5984234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 1036522 - 1036469
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  1036522 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtat 1036469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 1043290 - 1043234
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||    
T  1043290 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcgg 1043234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 8132244 - 8132188
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||| |||||||||||  ||||||||| |||||||||||||||||    
T  8132244 gtatcggtgcaggatacgcaggggatacggtacgtcatctattttgaagtatcggag 8132188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 29168010 - 29167947
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggaggcttta 80  Q
    |||||||||||||||||| ||||||||||   |||||||||||||||||||||| ||||||||||    
T  29168010 aggtatcggtgcaggatacgcaggggatatgatacgtcatccattttgaagtat-ggaggcttta 29167947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 43189718 - 43189662
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||    
T  43189718 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcgg 43189662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 38948792 - 38948737
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||||||||||||| |||||||||||  ||||||||||||||| |||||||||||    
T  38948792 tatcggtgcaggatacgcaggggatacggtacgtcatccattttaaagtatcggag 38948737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 40776051 - 40776004
Alignment:
Q  23 ggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  40776051 ggtgcaggatacgcaggggatacattacgtcttccattttgaagtatc 40776004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 9781705 - 9781651
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||||||||||  ||||||| |||||||||||||||    
T  9781705 aggtatcggtgcaggatacgcaggggatacgatacgtcaaccattttgaagtatc 9781651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 34432446 - 34432496
Alignment:
Q  24 gtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||||||||    
T  34432446 gtgcatgatacgcaggggatacaatacgtcatccattttgaagtatcggag 34432496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 3708336 - 3708390
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| |||| ||||||||||| ||||||  |||||||||||||||||||||||||    
T  3708336 gtattggtgtaggatatgcagaggatacgatacgtcatccattttgaagtatcgg 3708390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 25256679 - 25256625
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||| ||| |||| ||||||| |||||||||||||||||| ||||    
T  25256679 aggtatcggtgcagaatacgcagaggatacagtacgtcatccattttgaaatatc 25256625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 14167144 - 14167092
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    ||||||||||||||| ||||| |||||  || |||||||||||||||||||||    
T  14167144 tatcggtgcaggatacgcaggtgatacgataagtcatccattttgaagtatcg 14167092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 33039676 - 33039620
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| ||| |||||||| || || ||||||||| |||||||||    
T  33039676 aggtatcggtgcaggatacgcaagggatacaatatgttatccattttaaagtatcgg 33039620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 2364740 - 2364686
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||| ||||||||| ||||||||||   ||||| |||||||||||||||||    
T  2364740 aggtatcgatgcaggatacgcaggggatatggtacgttatccattttgaagtatc 2364686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 9528894 - 9528943
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaa 65  Q
    ||||||||||||| ||||  || |||||||| ||||||||||||||||||    
T  9528894 aggtatcggtgcaagatacacaagggatacaatacgtcatccattttgaa 9528943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 34096610 - 34096663
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||| |||||||||||  |||||||  ||||||||| ||||||    
T  34096610 tatcggtgcaggatacgcaggggatacgatacgtcaatcattttgaaatatcgg 34096663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 10822458 - 10822410
Alignment:
Q  23 ggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    ||||||||||| |||||| |||   ||||||||||||||||||||||||    
T  10822458 ggtgcaggatacgcagggaatatgatacgtcatccattttgaagtatcg 10822410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28659357 - 28659409
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||||||| |||| |||||| ||||  ||||||||||||||| |||||||    
T  28659357 gtatcggtgcatgatacgcagggaataccgtacgtcatccattttaaagtatc 28659409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 41676044 - 41676100
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||| |||| ||||| |||||  ||||||||||||||| || ||||||    
T  41676044 aggtatcggtgcatgatacgcaggagatacggtacgtcatccattttaaaatatcgg 41676100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 31079678 - 31079617
Alignment:
Q  13 gagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  31079678 gagaagtatcggtgcaggatacgcaggggatacaatacgtcatccattttaaagtatcggag 31079617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1036881 - 1036937
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  1036881 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 1036937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27084048 - 27083992
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  27084048 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 27083992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 8357021 - 8356967
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  8357021 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatc 8356967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 31195924 - 31195977
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  31195924 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtat 31195977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 32018037 - 32017986
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  32018037 tatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatc 32017986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13607840 - 13607894
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||    
T  13607840 aggtatcagtgcaggatatgcagaggatacgatacgtcatccattttgaagtatc 13607894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 234369 - 234313
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| ||||| |||||  ||||||| |||||||||||||||||    
T  234369 aggtatcggtgcaggatacgcaggagatacgatacgtcaaccattttgaagtatcgg 234313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 26327218 - 26327162
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||  |||| |||||  |||||||||||||||||||||||||    
T  26327218 aggtatcggtgcaggatacacaggagatacgatacgtcatccattttgaagtatcgg 26327162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 3299204 - 3299150
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||||||||||||||||||| ||||||  ||| ||||| |||||||||||||    
T  3299204 aggtatcggtgcaggatatgcagaggatacggtacatcatctattttgaagtatc 3299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 6708096 - 6708152
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||| ||||  ||||||||||| || |||||||||||| |||||||||    
T  6708096 aggtatcggtgcatgatacacaggggatacaatatgtcatccattttaaagtatcgg 6708152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 32130714 - 32130770
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||| |||||||||| |||||||||||  |||||||| |||||| |||||||||    
T  32130714 aggtatcagtgcaggatacgcaggggatacggtacgtcattcattttaaagtatcgg 32130770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 29893026 - 29892975
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||| ||||||||| |||||||||||| ||| ||||||||||| |||||||    
T  29893026 tatcgatgcaggatacgcaggggatacagtacatcatccattttaaagtatc 29892975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 7188834 - 7188887
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||   ||||||||||||||||||||    
T  7188834 aggtatcggtgcaggatacgcaggggatacggta---catccattttgaagtatcgg 7188887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 10894628 - 10894681
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||||||||| |||| || ||||||||  |||||||||||||||||||||||    
T  10894628 aggtatcggtgcatgatacgc-ggggatacggtacgtcatccattttgaagtatc 10894681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 25834553 - 25834607
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||| |||||||||| ||| |||||||  ||||||||||| |||||||||||||    
T  25834553 gtatcagtgcaggatacgcacgggatacgatacgtcatccaatttgaagtatcgg 25834607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 3212537 - 3212484
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||  || || ||||  |||||||||||||||||||||||||    
T  3212537 tatcggtgcaggatacacaaggaatacgatacgtcatccattttgaagtatcgg 3212484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 31741211 - 31741268
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgga 73  Q
    |||||||| |||| |||  | |||||||||  ||||||||||||||||||||||||||    
T  31741211 aggtatcgatgcatgatgcgtaggggatacgatacgtcatccattttgaagtatcgga 31741268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 25969457 - 25969401
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  25969457 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 25969401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 40095710 - 40095654
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  40095710 aggtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 40095654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 39520858 - 39520804
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  39520858 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 39520804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 42897060 - 42897006
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  42897060 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 42897006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 11829746 - 11829693
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  11829746 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 11829693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 1043126 - 1043182
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| ||||||||| |||||||||||  |||||||||||||||||||||||||    
T  1043126 aggtatcgatgcaggatacgcaggggatacgatacgtcatccattttgaagtatcgg 1043182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 9250477 - 9250529
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagta 68  Q
    |||||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  9250477 aggtatcggtgcaggatacgcaggggatacgatacgtcatccattttgaagta 9250529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 27353981 - 27353925
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||    
T  27353981 aggtatcggtgcaggatacgcagggaatacggtacgtcatccattttgaagtatcgg 27353925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 34238218 - 34238162
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||| ||| |||||||||||  |||||||||||||||||||||||||    
T  34238218 aggtatcggtgcagaatacgcaggggatacggtacgtcatccattttgaagtatcgg 34238162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 35159923 - 35159867
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||    
T  35159923 gtatcggtgcagaatatgcaggggatacgatacatcatccattttgaagtatcggag 35159867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 36202837 - 36202889
Alignment:
Q  20 atcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  36202837 atcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 36202889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 48163468 - 48163412
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||||||| |||||||||||||||||    
T  48163468 aggtatcggtgcaggatacgcaggggatacggtacgtcacccattttgaagtatcgg 48163412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 44960185 - 44960248
Alignment:
Q  11 cagagaggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||| |||| || |||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  44960185 cagacaggtgtcagtgcaggatacgcaggggatacgatacgtcatccattttgaagtatcggag 44960248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 16564415 - 16564469
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||| |||||||| |||||||||||  |||||||||||||||||||||||||    
T  16564415 gtatcggggcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 16564469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 16601247 - 16601193
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||| |||||||| |||||||||||  |||||||||||||||||||||||||    
T  16601247 gtatcggggcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 16601193  T

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Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 27398102 - 27398156
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||| |||||||    
T  27398102 aggtatcagtgcaggatacgcaggggatacagtacgtcatccattttaaagtatc 27398156  T

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Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 34122672 - 34122726
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||||||| |||| ||||||  |||||||||||||||||||||||    
T  34122672 aggtatcggtgcaggatacgcagaggatacggtacgtcatccattttgaagtatc 34122726  T

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Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 11058409 - 11058360
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagta 68  Q
    ||||||||||||||| |||||||||||  |||||||||||||||||||||    
T  11058409 tatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagta 11058360  T

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Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 4291572 - 4291516
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||| ||||||||||| |||||||||    
T  4291572 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttaaagtatcgg 4291516  T

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Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 33454127 - 33454074
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||| |||||||||| |||||||||||  |||||||||||||||||| ||||||    
T  33454127 tatcagtgcaggatacgcaggggatacgatacgtcatccattttgaaatatcgg 33454074  T

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Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 23079095 - 23079151
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| | ||||||| |||||||||||  || ||||||||||||||||||||||    
T  23079095 aggtatcgatccaggatacgcaggggatacggtatgtcatccattttgaagtatcgg 23079151  T

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Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 38263059 - 38263003
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||| ||||||||| |||| | ||||  |||||||||||||||||||||||||    
T  38263059 aggtatcgatgcaggatacgcagagaatacggtacgtcatccattttgaagtatcgg 38263003  T

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Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 44269778 - 44269730
Alignment:
Q  24 gtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||| |||||||  |||||||||||| ||||||||||||    
T  44269778 gtgcaggatatgcacgggataccgtacgtcatccatcttgaagtatcgg 44269730  T

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Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 47238662 - 47238718
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||  ||| |||||||||||  ||| |||||||||||||||||||||    
T  47238662 aggtatcggtgcaatatacgcaggggatacgatacatcatccattttgaagtatcgg 47238718  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26845951 - 26846006
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcg 71  Q
    |||||||||||||||||| ||| | |||||  ||| ||||||||||||||||||||    
T  26845951 aggtatcggtgcaggatacgcatgagatacggtacatcatccattttgaagtatcg 26846006  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 19510581 - 19510527
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||| ||||| ||||  ||||||||||  |||||||||||||||||||||||||    
T  19510581 gtatcagtgcatgatacacaggggatacgatacgtcatccattttgaagtatcgg 19510527  T

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Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 27555424 - 27555478
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatc 70  Q
    |||||||||||||| ||| |||| | ||||  |||||||||||||||||||||||    
T  27555424 aggtatcggtgcagaatacgcagagaatacggtacgtcatccattttgaagtatc 27555478  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 21409451 - 21409398
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtat 69  Q
    ||||||| ||||||||||| |||| |||||  ||||||||||||||| ||||||    
T  21409451 aggtatcagtgcaggatatacaggagatacgatacgtcatccatttttaagtat 21409398  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 26773770 - 26773823
Alignment:
Q  19 tatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||| ||| |||||||  ||||||||| ||||| |||||||||    
T  26773770 tatcggtgcaggatacgcaagggatacgatacgtcatcaattttaaagtatcgg 26773823  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 554935 - 554991
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||||||||||  ||||||||||  ||||||||| |||||  ||||||||    
T  554935 aggtatcggtgcaggatacacaggggatacgatacgtcatctattttagagtatcgg 554991  T

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Target: scaffold0285 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 13313 - 13255
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcggag 74  Q
    |||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||    
T  13313 aggtatcggtgcaggatacgcaggagatacgatacgtcatccattttgaagtatcggag 13255  T

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Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 44647 - 44701
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  44647 gtatcggtgcaggatacgcaggggatacggtacgtcatccattttgaagtatcgg 44701  T

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Target: scaffold0640 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 8147 - 8203
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  ||| |||||||||||||||||||||    
T  8147 aggtatcggtgcaggatacgcaggggatacggtacatcatccattttgaagtatcgg 8203  T

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Target: scaffold0250 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 5575 - 5519
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||||||||| |||||||||||  |||||| ||||||||||||||||||    
T  5575 aggtatcggtgcaggatacgcaggggatacggtacgtcgtccattttgaagtatcgg 5519  T

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Target: scaffold0177 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 25587 - 25641
Alignment:
Q  18 gtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||||| ||| |||||||||||  | |||||||||||||||||||||||    
T  25587 gtatcggtgcagaatacgcaggggatacggtgcgtcatccattttgaagtatcgg 25641  T

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Target: scaffold0406 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 13921 - 13873
Alignment:
Q  24 gtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    |||||||||| ||||  |||||| |||||||||||||||||||||||||    
T  13921 gtgcaggatacgcagatgatacagtacgtcatccattttgaagtatcgg 13873  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 30499 - 30555
Alignment:
Q  16 aggtatcggtgcaggatatgcaggggatacattacgtcatccattttgaagtatcgg 72  Q
    ||||||||||| |||||| |||||  ||||  ||||| |||||||||||||||||||    
T  30499 aggtatcggtgtaggatacgcaggaaatacggtacgttatccattttgaagtatcgg 30555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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