View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3474_low_6 (Length: 304)
Name: NF3474_low_6
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3474_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 35204593 - 35204872
Alignment:
| Q |
1 |
accatgtttcattgcaaagatatgcgaaatatagaaggatataagtttataaaaacactaataaccagttttagtgtagataaaaccactatagtgagta |
100 |
Q |
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| T |
35204593 |
accatgtttcattgcaaagatatgcgaaatatagaaggttataagtttataaaaacactaataaccagttttagtgtagataaaaccactatagtgagta |
35204692 |
T |
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| Q |
101 |
tagttaattagcttaggattaactactacaattatttgcggctaattaaagttagtagcaagaggtaacatttaaatgttcataaaggatggttttaaga |
200 |
Q |
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| T |
35204693 |
tagttaattagcttaggattaactactacaattatttgcggc----taaagttagtagcaagaggtaacatttaaatgttcataaaggatggttttaaga |
35204788 |
T |
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| Q |
201 |
tagatattggtaacattttgaaaagnnnnnnnngtagagttaagtgttgccaaaaggtctaaatatatatactagtgaaccatatatt |
288 |
Q |
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| T |
35204789 |
tagatattggtaacattttgaaaagaaaaaaaagtagagttaagtgttgccaaaaggtctaa----atatactagtgaaccatatatt |
35204872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 22471824 - 22471864
Alignment:
| Q |
104 |
ttaattagcttaggattaactactacaattatttgcggcta |
144 |
Q |
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| T |
22471824 |
ttaattagcttagtattaactacaacaattatttgcagcta |
22471864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 32474866 - 32474818
Alignment:
| Q |
3 |
catgtttcattgcaaagatatgcgaaatatagaaggatataagtttata |
51 |
Q |
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| T |
32474866 |
catgtttcattgcaaatatatactaaatatggaaggatataagcttata |
32474818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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