View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3474_low_8 (Length: 291)
Name: NF3474_low_8
Description: NF3474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3474_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 35204606 - 35204311
Alignment:
| Q |
1 |
caatgaaacatggtatctttgtcttttgtttgcactttacaattatattcgtcatctttcataaggatttatttctcattctggatgagcttattgagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35204606 |
caatgaaacatggtatctttgtctttggtttgcactttacaattatattcgtcatctttcataaggatttatttctcattctggatgagtttattgagac |
35204507 |
T |
|
| Q |
101 |
aaacacaactttgtaaatgtttttgtttcttgtttgtttcccttctatttagacccctactcttttaactgaat----------------atatgttttt |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35204506 |
aaacacaactttgtaaatgtttttgtttcttgtttgtttcccttctatttagacccctactcttttaactgaatattagtattatactcaatatgttttt |
35204407 |
T |
|
| Q |
185 |
gtgtactcccattttgtaaatattgttgctttctacagtgtatcttaattgtgaccgtcccggagtttgtctggatgttgctgttaatgatgatgt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35204406 |
gtgtactcccattttgtaaatattgttgctttctacagtgtatcttaattgtgaccgtcccggagtttgtctggatgttgctgttaatgatgatgt |
35204311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 32474883 - 32474959
Alignment:
| Q |
29 |
tttgcactttacaattatattcgtcatctttcataaggatttatttctcattctggatgagcttattgagacaaaca |
105 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| || |||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
32474883 |
tttgcacttaacaattatatttctcatctttcctacaaatttatttctttttctggatgaaattatggagacaaaca |
32474959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University