View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_high_17 (Length: 204)
Name: NF3475_high_17
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 40208036 - 40208210
Alignment:
| Q |
15 |
cagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcacattctgtgttaccttt |
114 |
Q |
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| T |
40208036 |
cagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcacattctgtgttaccttt |
40208135 |
T |
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| Q |
115 |
gatagaggtatcactttgtctactataaccaataatggtcaaaacagtgatgtataggaagagaagagttgctac |
189 |
Q |
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| T |
40208136 |
gatagtggtatcactttgtctactataaccaataatggtcaaaacagtgatgtataggaagagaagagttgctac |
40208210 |
T |
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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 21793297 - 21793213
Alignment:
| Q |
15 |
cagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcaca |
99 |
Q |
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| T |
21793297 |
cagagataccggcggtgcagtaaacaagaatgaaaatcatgccaccaaaagcccaagcaatacccaaaattccaacaccatcaca |
21793213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 21793178 - 21793129
Alignment:
| Q |
137 |
ctataaccaataatggtcaaaacagtgatgtataggaagagaagagttgc |
186 |
Q |
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| T |
21793178 |
ctataaccaataatggtcaaaacagtgacataaaggaagagaagtgttgc |
21793129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 4483487 - 4483527
Alignment:
| Q |
50 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
90 |
Q |
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| T |
4483487 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
4483527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 2650119 - 2650150
Alignment:
| Q |
47 |
aagatcataccaccaaaagcccaagcaattcc |
78 |
Q |
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| T |
2650119 |
aagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 31460749 - 31460812
Alignment:
| Q |
15 |
cagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcc |
78 |
Q |
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| T |
31460749 |
cagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattcc |
31460812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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