View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_high_3 (Length: 602)
Name: NF3475_high_3
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 172 - 587
Target Start/End: Original strand, 40207796 - 40208210
Alignment:
| Q |
172 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttacatgagccaaattaacnnnnnnn-tcaaggtaaatcgttaattaacaaatcaaa |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40207796 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttagatgagccaaattaaccaaaaaaatcaaggtaaatcgttaattaacaaatcaaa |
40207895 |
T |
|
| Q |
271 |
gatgaatattgttagaattagttggaataacatttaaggttgtcactataaagtgtatatcatatacactttccgactaaataactaacttgtaactacc |
370 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40207896 |
gatgaatattgttagaattagttggaatatcgtttaaggttgtcactataaagtgtatatcata--cactttccgactaaataactaacttgtaactacc |
40207993 |
T |
|
| Q |
371 |
ttaaacaacattcaacgaaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagc |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207994 |
ttaaacaacattcaacgaaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagc |
40208093 |
T |
|
| Q |
471 |
aattcccaaaacaccaacaccatcacattctgtgttacctttgatagaggtatcactttgtctactataaccaataatggtcaaaacagtgatgtatagg |
570 |
Q |
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| T |
40208094 |
aattcccaaaacaccaacaccatcacattctgtgttacctttgatagtggtatcactttgtctactataaccaataatggtcaaaacagtgatgtatagg |
40208193 |
T |
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| Q |
571 |
aagagaagagttgctac |
587 |
Q |
| |
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| T |
40208194 |
aagagaagagttgctac |
40208210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 40207657 - 40207795
Alignment:
| Q |
8 |
cgaagaatatcatgagtttttattgaatgtcgaaattaatagtaaatctcgattaaactcaactaaagaatccatgtaaaaacacaaccatggaaaggga |
107 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
40207657 |
cgaacaatatcatgagttttcattgaatgtcgaaattaatagtaaatctcgattaaactcaactaaagaatctatgt--aaacacaaccatggaaaggga |
40207754 |
T |
|
| Q |
108 |
aacttaaaattccaccacatgtaattaaacaaaaaattgtt |
148 |
Q |
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| T |
40207755 |
aacttaaaattccaccacatgttattaaacaaaaaattgtt |
40207795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 405 - 497
Target Start/End: Complemental strand, 21793305 - 21793213
Alignment:
| Q |
405 |
tagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcaca |
497 |
Q |
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| T |
21793305 |
tagcataccagagataccggcggtgcagtaaacaagaatgaaaatcatgccaccaaaagcccaagcaatacccaaaattccaacaccatcaca |
21793213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 584
Target Start/End: Complemental strand, 21793178 - 21793129
Alignment:
| Q |
535 |
ctataaccaataatggtcaaaacagtgatgtataggaagagaagagttgc |
584 |
Q |
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| T |
21793178 |
ctataaccaataatggtcaaaacagtgacataaaggaagagaagtgttgc |
21793129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 448 - 488
Target Start/End: Original strand, 4483487 - 4483527
Alignment:
| Q |
448 |
atcataccaccaaaagcccaagcaattcccaaaacaccaac |
488 |
Q |
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| T |
4483487 |
atcattccaccaaaagcccaagcaattccctgaacaccaac |
4483527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 410 - 476
Target Start/End: Original strand, 31460746 - 31460812
Alignment:
| Q |
410 |
taccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcc |
476 |
Q |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattcc |
31460812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 476
Target Start/End: Original strand, 2650119 - 2650150
Alignment:
| Q |
445 |
aagatcataccaccaaaagcccaagcaattcc |
476 |
Q |
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| T |
2650119 |
aagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 2622075 - 2622039
Alignment:
| Q |
350 |
aataactaacttgtaactaccttaaacaacattcaac |
386 |
Q |
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| T |
2622075 |
aataactaactcgtaactaccttaaacaatattcaac |
2622039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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