View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3475_high_4 (Length: 599)

Name: NF3475_high_4
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3475_high_4
NF3475_high_4
[»] chr3 (79 HSPs)
chr3 (18-460)||(2441871-2442312)
chr3 (414-595)||(1889228-1889409)
chr3 (414-595)||(1897307-1897488)
chr3 (414-595)||(1906753-1906934)
chr3 (414-595)||(2932152-2932327)
chr3 (414-525)||(1890764-1890875)
chr3 (415-576)||(1940240-1940395)
chr3 (185-242)||(2644357-2644414)
chr3 (185-242)||(2659147-2659204)
chr3 (186-242)||(2696727-2696783)
chr3 (186-242)||(4142129-4142185)
chr3 (186-242)||(4157939-4157995)
chr3 (407-478)||(4141893-4141964)
chr3 (414-528)||(997810-997924)
chr3 (186-252)||(3754600-3754666)
chr3 (185-235)||(13498223-13498273)
chr3 (414-565)||(1022705-1022850)
chr3 (185-266)||(7942484-7942565)
chr3 (185-237)||(754609-754661)
chr3 (414-478)||(1014200-1014264)
chr3 (414-470)||(1936741-1936797)
chr3 (185-237)||(2456248-2456300)
chr3 (185-237)||(7324431-7324483)
chr3 (186-249)||(989396-989459)
chr3 (186-237)||(1891064-1891115)
chr3 (186-241)||(7432050-7432105)
chr3 (186-252)||(1940564-1940630)
chr3 (188-238)||(2459277-2459327)
chr3 (187-237)||(2492083-2492133)
chr3 (187-237)||(2631358-2631408)
chr3 (185-235)||(9561987-9562037)
chr3 (183-249)||(12133094-12133160)
chr3 (413-454)||(1930946-1930987)
chr3 (185-242)||(2476633-2476690)
chr3 (185-242)||(2502147-2502204)
chr3 (185-242)||(7334234-7334291)
chr3 (186-235)||(9608346-9608395)
chr3 (187-239)||(768327-768379)
chr3 (185-237)||(771499-771551)
chr3 (186-242)||(803213-803269)
chr3 (407-475)||(3754827-3754895)
chr3 (185-237)||(7430536-7430588)
chr3 (185-237)||(9565829-9565881)
chr3 (185-237)||(37753345-37753397)
chr3 (185-237)||(43991959-43992011)
chr3 (407-478)||(671069-671140)
chr3 (186-249)||(968671-968734)
chr3 (186-249)||(1931142-1931205)
chr3 (407-445)||(763341-763379)
chr3 (186-240)||(956381-956435)
chr3 (527-565)||(1027820-1027858)
chr3 (408-470)||(2696457-2696519)
chr3 (187-237)||(7442977-7443027)
chr3 (186-247)||(1007461-1007522)
chr3 (414-565)||(1007677-1007822)
chr3 (413-458)||(12218278-12218323)
chr3 (186-242)||(1022489-1022545)
chr3 (185-237)||(1437995-1438046)
chr3 (189-237)||(9587185-9587233)
chr3 (187-239)||(9594622-9594674)
chr3 (198-237)||(746383-746422)
chr3 (195-242)||(2686307-2686354)
chr3 (186-248)||(1936969-1937031)
chr3 (188-238)||(7398178-7398228)
chr3 (20-86)||(12132943-12133009)
chr3 (20-86)||(13479442-13479508)
chr3 (188-238)||(23197014-23197064)
chr3 (188-233)||(997578-997623)
chr3 (188-233)||(1013968-1014013)
chr3 (415-456)||(2678171-2678212)
chr3 (30-71)||(2678541-2678582)
chr3 (407-468)||(3746235-3746295)
chr3 (22-71)||(3754460-3754509)
chr3 (22-71)||(4142279-4142328)
chr3 (185-237)||(783799-783851)
chr3 (186-242)||(792899-792955)
chr3 (186-242)||(2678394-2678450)
chr3 (190-238)||(3746012-3746060)
chr3 (415-475)||(7431810-7431870)
[»] chr7 (5 HSPs)
chr7 (20-261)||(1078136-1078371)
chr7 (190-239)||(3927063-3927112)
chr7 (416-478)||(1077922-1077984)
chr7 (32-87)||(24723212-24723267)
chr7 (186-236)||(1421170-1421220)
[»] chr4 (8 HSPs)
chr4 (414-472)||(22671898-22671956)
chr4 (190-248)||(20016174-20016232)
chr4 (186-248)||(20019761-20019823)
chr4 (189-249)||(22672115-22672175)
chr4 (196-238)||(55419792-55419834)
chr4 (20-86)||(20019896-20019962)
chr4 (413-454)||(20019546-20019587)
chr4 (414-475)||(27471348-27471409)
[»] chr2 (12 HSPs)
chr2 (186-239)||(7160752-7160805)
chr2 (196-240)||(6538844-6538888)
chr2 (186-239)||(7156190-7156243)
chr2 (186-238)||(36577366-36577418)
chr2 (189-239)||(7168688-7168738)
chr2 (186-239)||(7174371-7174424)
chr2 (186-239)||(11237693-11237746)
chr2 (186-237)||(33038160-33038211)
chr2 (187-237)||(33020314-33020364)
chr2 (186-239)||(7199976-7200029)
chr2 (185-237)||(33026656-33026708)
chr2 (185-237)||(34560917-34560969)
[»] chr5 (22 HSPs)
chr5 (186-238)||(11081813-11081865)
chr5 (186-242)||(23766857-23766913)
chr5 (186-242)||(23816705-23816761)
chr5 (186-242)||(23769641-23769697)
chr5 (186-242)||(23819489-23819545)
chr5 (185-235)||(20292994-20293044)
chr5 (179-215)||(2067074-2067110)
chr5 (28-82)||(1427824-1427878)
chr5 (185-235)||(20301442-20301492)
chr5 (185-235)||(20305855-20305905)
chr5 (185-235)||(20310259-20310309)
chr5 (414-468)||(23769409-23769463)
chr5 (414-468)||(23819257-23819311)
chr5 (283-328)||(11081910-11081955)
chr5 (416-464)||(1427460-1427508)
chr5 (186-242)||(23732167-23732223)
chr5 (186-241)||(1427689-1427744)
chr5 (407-478)||(11082040-11082111)
chr5 (414-477)||(23644661-23644724)
chr5 (17-71)||(2067212-2067266)
chr5 (420-477)||(23813850-23813907)
chr5 (186-242)||(23861021-23861077)
[»] chr6 (15 HSPs)
chr6 (197-245)||(176345-176393)
chr6 (189-249)||(370773-370833)
chr6 (196-242)||(1442103-1442149)
chr6 (187-237)||(24417486-24417536)
chr6 (190-240)||(7564748-7564798)
chr6 (185-238)||(1470922-1470975)
chr6 (185-235)||(9819831-9819881)
chr6 (188-238)||(19119065-19119115)
chr6 (188-238)||(19126359-19126409)
chr6 (185-238)||(1459540-1459593)
chr6 (190-235)||(9703888-9703933)
chr6 (414-455)||(9819605-9819646)
chr6 (186-238)||(4183000-4183052)
chr6 (186-238)||(4743844-4743896)
chr6 (186-238)||(17368366-17368418)
[»] scaffold0044 (2 HSPs)
scaffold0044 (190-237)||(89147-89194)
scaffold0044 (415-459)||(89396-89440)
[»] scaffold0015 (1 HSPs)
scaffold0015 (186-236)||(32330-32380)
[»] chr1 (7 HSPs)
chr1 (190-240)||(51381452-51381502)
chr1 (186-238)||(51858606-51858658)
chr1 (186-227)||(23896147-23896188)
chr1 (186-235)||(24629213-24629262)
chr1 (186-235)||(51782799-51782848)
chr1 (186-238)||(51756749-51756801)
chr1 (186-238)||(51854947-51854999)
[»] scaffold1004 (1 HSPs)
scaffold1004 (415-479)||(2387-2451)
[»] scaffold0760 (1 HSPs)
scaffold0760 (415-479)||(4882-4946)
[»] chr8 (1 HSPs)
chr8 (414-478)||(19728112-19728176)


Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 79)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 2441871 - 2442312
Alignment:
Q  18 agaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnntaaatgtgtgtaacttcttgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  2441871 agaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctgggggggtaaatgtgtgtaacttcttgg 2441970  T
Q  118 ccttgtttgtgttgagagattgtttgtgcgtgacttatggtgatagtgattttgattcggttatgaaggatgtttggattatgaaggagtatggaaataa 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2441971 ccttgtttgtgttgagggattgtttgtgcgtgacttatggtgatagtgattttgattcggttctgaaggatgtttggattatgaaggagtatggaaataa 2442070  T
Q  218 agattcttggactaaattgttcactctttcttgcagggtagatcgaggtgtatctcatatttctgccaagccggtatatttatttgaggatgatcaagtg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2442071 agattcttggactaaattgttcactctttcttgcagggtagatcgaggtgtatctcatatttctgccaagccggtatatttatttgaggatgatcaagtg 2442170  T
Q  318 ttgttgaagttgacaggggcgtttaattcgtttgtttacgattccaggagtggtactttcaagtctagtgattttcaaaacatcttaggagtctctgttg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2442171 ttgttgaagttgacaggggcgtttaattcgtttgtttacgattccaggagtggtactttaaagtctagtgattttcaaaacatcttaggagtctctgttg 2442270  T
Q  418 agagtttaatatcaccttgttcttaatgctagaatgtagatgt 460  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  2442271 agagtttaatatcaccttgttcttaatgctag-atgtagatgt 2442312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 414 - 595
Target Start/End: Complemental strand, 1889409 - 1889228
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaattttt 513  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1889409 gttgagagtttgatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaattttt 1889310  T
Q  514 gtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1889309 gtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 1889228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 414 - 595
Target Start/End: Complemental strand, 1897488 - 1897307
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaattttt 513  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |    
T  1897488 gttgagagtttgatatcaccttgttcttaatgctagaatgtaaatgtggtgctatgtaacttgagtgtgagactaatctaaaacctttatgtcaatttct 1897389  T
Q  514 gtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 595  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  1897388 gtttaggatatttttatttattttgtagttgttctgattattggttacttgatggattattgttaaggttcatttgaatatg 1897307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 414 - 595
Target Start/End: Complemental strand, 1906934 - 1906753
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaattttt 513  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |    
T  1906934 gttgagagtttgatatcaccttgttcttaatgctagaatgtaaatgtggtgctatgtaacttgagtgtgagactaatctaaaacctttatgtcaatttct 1906835  T
Q  514 gtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 595  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  1906834 gtttaggatatttttatttattttgtagttgttctgattattggttacttgatggattattgttaaggttcatttgaatatg 1906753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 414 - 595
Target Start/End: Original strand, 2932152 - 2932327
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaattttt 513  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| |    
T  2932152 gttgagagtttgatatcaccttgttcttaatgctagaatgcagatgtggggctatatcacttgagagtgagactaaactaaaacctttatgtcaatttct 2932251  T
Q  514 gtttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgttaaggttcatttgaatatg 595  Q
     ||||||      ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  2932252 atttagg------atatttattttgtacttgttctgatgattggttacttcatggattattgttaaggttcatttgaatatg 2932327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 414 - 525
Target Start/End: Complemental strand, 1890875 - 1890764
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaattttt 513  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||| ||||||| |    
T  1890875 gttgagagtttgatatcgccttgttcttaatgctagaatgtagatgtggtactatgtcacttgagagtgagattaaactaaaacctatatttcaatttct 1890776  T
Q  514 gtttaggatatt 525  Q
    |||| |||||||    
T  1890775 gttttggatatt 1890764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 576
Target Start/End: Complemental strand, 1940395 - 1940240
Alignment:
Q  415 ttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaatttttg 514  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||| |||| ||||| ||||||||| ||| |   | ||||| ||||| ||    
T  1940395 ttgagagtttgatatcaccttgttcttagtgctataatgtagacgtggttctatatcacatgagaatgagactaaactagactttatatgttaatttctg 1940296  T
Q  515 tttaggatatttatatttattttgtacttgttctgattattggttacttcagggattattgt 576  Q
    ||||      |  ||||| |||| || |||||||||||||||||||||||| |||| |||||    
T  1940295 ttta------tggtatttgttttttatttgttctgattattggttacttcatggatcattgt 1940240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 2644414 - 2644357
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  2644414 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacact 2644357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 2659204 - 2659147
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  2659204 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacact 2659147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 2696783 - 2696727
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 4142185 - 4142129
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4142129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 4157995 - 4157939
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 407 - 478
Target Start/End: Complemental strand, 4141964 - 4141893
Alignment:
Q  407 agtctctgttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 478  Q
    ||||| |||||| ||||||||||||||| |||||  |||||||||| ||||||| |||||||||||||||||    
T  4141964 agtctgtgttgaaagtttaatatcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag 4141893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 414 - 528
Target Start/End: Original strand, 997810 - 997924
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgagactaatctaaaacctttatgtcaattttt 513  Q
    ||||||||||||||||| | || ||||||||||||| |||| |||| ||||||||||||||||||  ||| | | | ||| | ||| ||||| ||||| |    
T  997810 gttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgagtatgatatttaactagagcctatatgttaatttat 997909  T
Q  514 gtttaggatatttat 528  Q
    ||||| |||||||||    
T  997910 gtttatgatatttat 997924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 3754600 - 3754666
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgca 252  Q
    ||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| || ||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtttactattccttgca 3754666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 13498223 - 13498273
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  13498223 ggatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 565
Target Start/End: Original strand, 1022705 - 1022850
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgaga-ctaatctaaaacctttatgtcaatttt 512  Q
    ||||||||||||||||| |||||| |||||||||||  |||||||| ||||||||||| ||||||  ||| | |||| ||  ||||| ||||| |||||     
T  1022705 gttgagagtttaatatcgccttgtccttaatgctagtttgtagatgaggtgctatgtcccttgagcatgaaatctaa-ctggaacctatatgttaattta 1022803  T
Q  513 tgtttaggatatttatatttattttgtacttgttctgattattggttacttca 565  Q
     |||||      | |||||||||||| ||||||||||||||||| ||||||||    
T  1022804 cgttta------tgatatttattttgaacttgttctgattattgattacttca 1022850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 7942484 - 7942565
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgcagggtagatcgaggt 266  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||||| || | || ||| || || ||||||||||    
T  7942484 ggatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatcgaggt 7942565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 754661 - 754609
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  754661 ggatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 478
Target Start/End: Original strand, 1014200 - 1014264
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 478  Q
    ||||||||||||||||| | || ||||||||||||| |||| |||| ||||||||||||||||||    
T  1014200 gttgagagtttaatatcccttttttcttaatgctagtatgttgatgaggtgctatgtcacttgag 1014264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 1936797 - 1936741
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgt 470  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||    
T  1936797 gttgagagtttgatatcaccttgtttttaatgctagaatgtagaagtggttctatgt 1936741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 2456248 - 2456300
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  2456248 ggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 7324483 - 7324431
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  7324483 ggatgtttggattatgaaggactacggaaataaagagtcttggactaaattgt 7324431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 989396 - 989459
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 249  Q
    ||||||||| | ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttcactatttctt 989459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 1891115 - 1891064
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 7432105 - 7432050
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcac 241  Q
    |||||||||| ||||||||| |||||||||||||| || |||||||||||||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcac 7432050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 1940630 - 1940564
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttcttgca 252  Q
    ||||||||| ||||||||||  |||||||| |||| || |||||||||||||||||| |||||||||    
T  1940630 gatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttcttgca 1940564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 2459277 - 2459327
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 2492083 - 2492133
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 2492133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 2631358 - 2631408
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 9562037 - 9561987
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||||||    
T  9562037 ggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 12133094 - 12133160
Alignment:
Q  183 aaggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 249  Q
    |||||||||||| |||||| |||||||||||||| ||| || |||||||||||||||| | ||||||    
T  12133094 aaggatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttcaatgtttctt 12133160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 1930987 - 1930946
Alignment:
Q  413 tgttgagagtttaatatcaccttgttcttaatgctagaatgt 454  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  1930987 tgttgagagtttgatatcaccttgttcttaatgctagaatgt 1930946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 2476633 - 2476690
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||||||||||  | |||||||||||||| |||||||||||||||| ||||    
T  2476633 ggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacact 2476690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 2502147 - 2502204
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||| ||| ||||    
T  2502147 ggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacact 2502204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 7334291 - 7334234
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    |||||||||||| |||||||| || ||||||||||| |||||||||||||||| ||||    
T  7334291 ggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacact 7334234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 9608395 - 9608346
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  9608395 gatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 768379 - 768327
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttc 768327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 771551 - 771499
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||| |||||||||| |||||||||| ||| ||||||||||||||||    
T  771551 ggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 803269 - 803213
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||| ||||||| || |||||||||||||| ||||||||||| |||||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 475
Target Start/End: Original strand, 3754827 - 3754895
Alignment:
Q  407 agtctctgttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcactt 475  Q
    ||||| || ||| |||||||||||||| | ||||  ||||||| |||||||||||||||||||||||||    
T  3754827 agtctgtggtgaaagtttaatatcaccatcttctctatgctaggatgtagatgtggtgctatgtcactt 3754895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 7430588 - 7430536
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||||||||||||| |||||||||||||| | |||| |||||||||||    
T  7430588 ggatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgt 7430536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 9565881 - 9565829
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||||    
T  9565881 ggatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgt 9565829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 37753397 - 37753345
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||||||||| |||| |||||||| ||||| ||||||||||||||||    
T  37753397 ggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 43991959 - 43992011
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||| |||||||    
T  43991959 ggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgt 43992011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 407 - 478
Target Start/End: Complemental strand, 671140 - 671069
Alignment:
Q  407 agtctctgttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 478  Q
    |||||| | ||||||||||||||  ||||| |||||||||||| || ||||||  |||||||||||||||||    
T  671140 agtctccgctgagagtttaatattgccttggtcttaatgctaggatttagatgcagtgctatgtcacttgag 671069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 968671 - 968734
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 249  Q
    ||||||||| ||||||||||  ||||||||||||| || ||||||||||| |||||| ||||||    
T  968671 gatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcactatttctt 968734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 1931205 - 1931142
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 249  Q
    ||||||||| |||||| |||  ||||||||||||| || |||||||||||||||||| ||||||    
T  1931205 gatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttctt 1931142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 763379 - 763341
Alignment:
Q  407 agtctctgttgagagtttaatatcaccttgttcttaatg 445  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  763379 agtctatgttgagagtttaatatcaccttgttcttaatg 763341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 956381 - 956435
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttca 240  Q
    |||||||||||||||||||| |||||||| ||||| ||||||  |||||||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttca 956435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 527 - 565
Target Start/End: Original strand, 1027820 - 1027858
Alignment:
Q  527 atatttattttgtacttgttctgattattggttacttca 565  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  1027820 atatttattttgtacttgttctcattattggttacttca 1027858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 470
Target Start/End: Complemental strand, 2696519 - 2696457
Alignment:
Q  408 gtctctgttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgt 470  Q
    |||| ||||||||||||  |||||||||| ||||||||||| ||| ||||||||||| |||||    
T  2696519 gtctatgttgagagtttgttatcaccttggtcttaatgctaaaatatagatgtggtgttatgt 2696457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 7443027 - 7442977
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||| |||||||||||||||||| |||| ||||||||||| ||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgt 7442977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 1007461 - 1007522
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttc 247  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||||| ||||    
T  1007461 gatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatttc 1007522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 414 - 565
Target Start/End: Original strand, 1007677 - 1007822
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgagagtgaga-ctaatctaaaacctttatgtcaatttt 512  Q
    ||||||||||||||||| |||| |||||||||||||  |||||||  |||||||||||  |||||  ||| | |||| ||  ||||| ||||| |||||     
T  1007677 gttgagagtttaatatcgccttattcttaatgctagtttgtagataaggtgctatgtcctttgagcatgaaatctaa-ctggaacctatatgttaattta 1007775  T
Q  513 tgtttaggatatttatatttattttgtacttgttctgattattggttacttca 565  Q
     ||||| |||||      |||||||| ||||||||||||||||| ||||||||    
T  1007776 cgtttatgatat------ttattttgaacttgttctgattattgattacttca 1007822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 12218278 - 12218323
Alignment:
Q  413 tgttgagagtttaatatcaccttgttcttaatgctagaatgtagat 458  Q
    |||||||||||| |||||||||||||||||||| ||| ||||||||    
T  12218278 tgttgagagtttgatatcaccttgttcttaatgttaggatgtagat 12218323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 1022489 - 1022545
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||| | |||||||| ||||||||||| || || ||||||||||||||||||    
T  1022489 gatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcact 1022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 1437995 - 1438046
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| ||||||||    
T  1437995 ggatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 9587233 - 9587185
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||||||||||| ||||||||||||||  ||||||| |||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgt 9587185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 9594674 - 9594622
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    ||||||||||||||||  |||| |||||| |||| ||||||||||||||||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttc 9594622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 746422 - 746383
Alignment:
Q  198 atgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgt 746383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 2686354 - 2686307
Alignment:
Q  195 attatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||| |||||||| ||||| ||||||| |||||||||||||    
T  2686354 attatgaaggaatatggaaaaaaagagtcttggaataaattgttcact 2686307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 1937031 - 1936969
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 248  Q
    ||||||||| |||||||||| |||  ||||||||| || ||| |||||||||||||| |||||    
T  1937031 gatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcactatttct 1936969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 7398228 - 7398178
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||| | |||||||||||||||||| |||| ||||||| |||||||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgtt 7398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 12132943 - 12133009
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 86  Q
    |||||| || |||||| |||||||||||||||  |||||||||| || |||||| |||| |||||||    
T  12132943 aagtcctcgttttattgtttcttttgatttgggaaaagagtcttttcgaaaggttttgcctcctgat 12133009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 13479442 - 13479508
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 86  Q
    |||||||||||| ||| ||||||||||||||  |||||| |||||| |||| || |||| |||||||    
T  13479442 aagtccacgcttcattgtttcttttgatttgcggaaagaatcttatgaaaaagttttgcctcctgat 13479508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 23197014 - 23197064
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtt 23197064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 233  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaa 233  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 2678212 - 2678171
Alignment:
Q  415 ttgagagtttaatatcaccttgttcttaatgctagaatgtag 456  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  2678212 ttgagagtttaatatggccttgttcttaatgctaggatgtag 2678171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 2678582 - 2678541
Alignment:
Q  30 tttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaag 2678541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 3746235 - 3746295
Alignment:
Q  407 agtctctgttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctat 468  Q
    ||||| ||||||||||||||||||||| |||||||  | |||| |||||| |||||||||||    
T  3746235 agtctgtgttgagagtttaatatcaccatgttctt-ttactaggatgtagttgtggtgctat 3746295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #73
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 3754460 - 3754509
Alignment:
Q  22 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    |||||||||||||| |||||||||||||||  || ||||| |||||||||    
T  3754460 gtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaag 3754509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #74
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 4142328 - 4142279
Alignment:
Q  22 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    ||||| |||||||| |||||||||||||||  || |||||||||||||||    
T  4142328 gtccatgctttattgtttcttttgatttggcaaaggagtcttatcaaaag 4142279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #75
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 783851 - 783799
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||||||||||||||| |||||||||| | |  | |||||||||||||    
T  783851 ggatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgt 783799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #76
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 792955 - 792899
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    |||||||||||||||||||||||||| ||  | || ||||||| |||||| ||||||    
T  792955 gatgtttggattatgaaggagtatggtaaagaggaatcttggagtaaattattcact 792899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #77
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 2678450 - 2678394
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||| |||||||  | |||||||| ||||| || ||||||||||||||||||    
T  2678450 gatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcact 2678394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #78
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 3746012 - 3746060
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    |||||||||||||||| |||| |||  |||| |||||||||||||||||    
T  3746012 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgtt 3746060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #79
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 475
Target Start/End: Complemental strand, 7431870 - 7431810
Alignment:
Q  415 ttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcactt 475  Q
    |||||||||| ||||| |||||||||||  ||||| |||||||||  ||||||| ||||||    
T  7431870 ttgagagtttgatatctccttgttcttaccgctaggatgtagatgctgtgctatatcactt 7431810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 1078371 - 1078136
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgattctnnnnnnntaaatgtgtgtaacttcttggcc 119  Q
    |||||| ||||||||| |||||||||||||||  ||||| |||||||||||||| |||| |||||||| |       || |||||||| ||||||| |||    
T  1078371 aagtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcacttcttagcc 1078272  T
Q  120 ttgtttgtgttgagagattgtttgtgcgtgacttatggtgatagtgattttgattcggttatgaaggatgtttggattatgaaggagtatggaaataaag 219  Q
    |||  ||||||||| ||||| |||||| || ||| | |||||   |||    | || || |   ||||||||||| ||||||||||||||||||||| ||    
T  1078271 ttgggtgtgttgagggattgcttgtgcctggcttctcgtgat---gatacctactctgtaa---aggatgtttgggttatgaaggagtatggaaatagag 1078178  T
Q  220 attcttggactaaattgttcactctttcttgcagggtagatc 261  Q
    | || |||||||||||||||| | |||||| ||||| |||||    
T  1078177 agtcgtggactaaattgttcaatgtttcttacaggggagatc 1078136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    ||||| |||||||||| |||||||||||| ||||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 478
Target Start/End: Complemental strand, 1077984 - 1077922
Alignment:
Q  416 tgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 478  Q
    |||||||||||||||||| ||||||||||| |||  ||||||| | ||||||| |||||||||    
T  1077984 tgagagtttaatatcaccatgttcttaatgttaggttgtagatctagtgctatatcacttgag 1077922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 24723212 - 24723267
Alignment:
Q  32 tattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgatt 87  Q
    |||| ||||| ||||||||||||| |||||||||||| || |||| ||||||||||    
T  24723212 tattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgatt 24723267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 1421220 - 1421170
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 236  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 414 - 472
Target Start/End: Complemental strand, 22671956 - 22671898
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtca 472  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  22671956 gttgagagtttaatatcaccttgttcttagtgctagtatgtagatgaggtgctatgtca 22671898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 20016232 - 20016174
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 248  Q
    ||||||| |||||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttct 20016174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 20019823 - 20019761
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttct 248  Q
    ||||||||| | |||||||| ||||||| | |||| |||||||||||||||||||||||||||    
T  20019823 gatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttct 20019761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 22672175 - 22672115
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 249  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||||| ||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttctt 22672115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 55419792 - 55419834
Alignment:
Q  196 ttatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  55419792 ttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 20019962 - 20019896
Alignment:
Q  20 aagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcctgat 86  Q
    |||| ||| ||||||| |||||||||||||||||||||| | || || |||||| |||| |||||||    
T  20019962 aagtgcactctttattgtttcttttgatttggagaaagaattttgtcgaaaggttttgcctcctgat 20019896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 20019587 - 20019546
Alignment:
Q  413 tgttgagagtttaatatcaccttgttcttaatgctagaatgt 454  Q
    |||||||||||| ||||||||||||| |||||||||| ||||    
T  20019587 tgttgagagtttgatatcaccttgtttttaatgctaggatgt 20019546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 27471409 - 27471348
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcactt 475  Q
    |||||||||||  ||||||||||||  |||||  || |||||||||||||||||||| ||||    
T  27471409 gttgagagtttggtatcaccttgtttctaatgtaaggatgtagatgtggtgctatgtgactt 27471348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7160805 - 7160752
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 7160752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 6538844 - 6538888
Alignment:
Q  196 ttatgaaggagtatggaaataaagattcttggactaaattgttca 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7156243 - 7156190
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttc 7156190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    |||||||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 7168738 - 7168688
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    |||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttc 7168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7174424 - 7174371
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    ||||| ||| |||||||||| ||||||||| ||||||||||||||| |||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttc 7174371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 11237693 - 11237746
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    ||||||||| ||||| ||||||||||||||| |||  |||||||||||||||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttc 11237746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 33038160 - 33038211
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||||||||||||| |||||||| ||| | |||||||||| |||||    
T  33038160 gatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgt 33038211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 33020314 - 33020364
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||| |||||||||||||| |||||||||||| | |||||||||| |||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgt 33020364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 7200029 - 7199976
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 239  Q
    ||||||||| |||||||||||| ||||||| || |||||||| ||| |||||||    
T  7200029 gatgtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttc 7199976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 33026656 - 33026708
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||| |||||||| | |||||||||||| | |||||||||| |||||    
T  33026656 ggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 33026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 34560969 - 34560917
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||||||  |||||||| || |||||||||||| | ||||||||||||||||    
T  34560969 ggatgtttcaattatgaaagaatatggaaataaaaaatcttggactaaattgt 34560917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 11081813 - 11081865
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23766913 - 23766857
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23766857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23816761 - 23816705
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcact 23816705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23769697 - 23769641
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23819545 - 23819489
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcact 23819489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 20292994 - 20293044
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  20292994 ggatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 2067110 - 2067074
Alignment:
Q  179 tatgaaggatgtttggattatgaaggagtatggaaat 215  Q
    |||||||||||||||||||||||||||||||||||||    
T  2067110 tatgaaggatgtttggattatgaaggagtatggaaat 2067074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 1427878 - 1427824
Alignment:
Q  28 gctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcc 82  Q
    |||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||    
T  1427878 gctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttcc 1427824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 20301442 - 20301492
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    ||||||||||||||||||||| |||| || |||||| ||||||||||||||    
T  20301442 ggatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 20305855 - 20305905
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    |||||| |||||||||||||| ||||||| |||||| ||||||||||||||    
T  20305855 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 20310259 - 20310309
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    |||||| |||||||||||||| ||||||| |||||| ||||||||||||||    
T  20310259 ggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 23769463 - 23769409
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctat 468  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||| ||||||    
T  23769463 gttgaaagtttgatatcaccttgttcttaatgttagaatgtagttgtgatgctat 23769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 23819311 - 23819257
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctat 468  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||| ||||||    
T  23819311 gttgaaagtttgatatcaccttgttcttaatgttagaatgtagttgtgatgctat 23819257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 11081910 - 11081955
Alignment:
Q  283 ccaagccggtatatttatttgaggatgatcaagtgttgttgaagtt 328  Q
    ||||| | |||||| |||||||||||||||||||||||||||||||    
T  11081910 ccaaggcagtatatatatttgaggatgatcaagtgttgttgaagtt 11081955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 464
Target Start/End: Complemental strand, 1427508 - 1427460
Alignment:
Q  416 tgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtg 464  Q
    ||||||||||||||||||||||||||| || ||  ||||||||||||||    
T  1427508 tgagagtttaatatcaccttgttcttattgttaagatgtagatgtggtg 1427460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 23732167 - 23732223
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    |||||||||||||||||||| ||||| |||||||  ||||||| |||| ||||||||    
T  23732167 gatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcact 23732223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 1427744 - 1427689
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcac 241  Q
    ||||||||| ||||||| ||||||||||||| ||| ||||||| |||| |||||||    
T  1427744 gatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcac 1427689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 478
Target Start/End: Original strand, 11082040 - 11082111
Alignment:
Q  407 agtctctgttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 478  Q
    ||||| |||||| |||||| ||||||||||||||  ||  ||  |||||||||||||||| |||||||||||    
T  11082040 agtctgtgttgaaagtttagtatcaccttgttctctatattaagatgtagatgtggtgctttgtcacttgag 11082111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 477
Target Start/End: Original strand, 23644661 - 23644724
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttga 477  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||  ||| |||||| || |||||    
T  23644661 gttgaaagtttgatatcaccttgttcttaatgttagaatgtagtagtgatgctatatcgcttga 23644724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 2067266 - 2067212
Alignment:
Q  17 aagaagtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 71  Q
    ||||| |||| |||||||| |||| | |||||||| |||||||||||||||||||    
T  2067266 aagaaatccaagctttattgtttcatatgatttggggaaagagtcttatcaaaag 2067212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 23813907 - 23813850
Alignment:
Q  420 agtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttga 477  Q
    ||||| |||||||||||||||||||| ||||||||||  ||| |||||| || |||||    
T  23813907 agtttgatatcaccttgttcttaatgttagaatgtagtagtgatgctatatcgcttga 23813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 23861077 - 23861021
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    ||||||||||| |||||||| ||||| |  ||||  |||||||||||||||||||||    
T  23861077 gatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcact 23861021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 176345 - 176393
Alignment:
Q  197 tatgaaggagtatggaaataaagattcttggactaaattgttcactctt 245  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||    
T  176345 tatgaatgattatggaaataaagattcttggactaaattgttcactctt 176393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 370833 - 370773
Alignment:
Q  189 gtttggattatgaaggagtatggaaataaagattcttggactaaattgttcactctttctt 249  Q
    |||||| |||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatttctt 370773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 1442149 - 1442103
Alignment:
Q  196 ttatgaaggagtatggaaataaagattcttggactaaattgttcact 242  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttcact 1442103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  187 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 7564798 - 7564748
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaattgttca 240  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttca 7564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 1470975 - 1470922
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    |||| ||||| ||||||| || ||||||||||||||||||||| ||||||||||    
T  1470975 ggatatttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 9819881 - 9819831
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    |||| ||||| |||||||||| |||||||||| ||| ||||||||||||||    
T  9819881 ggatatttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 19119065 - 19119115
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19119115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 19126359 - 19126409
Alignment:
Q  188 tgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||| | |||||||| ||||||||| |||| |||||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtt 19126409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 1459593 - 1459540
Alignment:
Q  185 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    |||| ||||| ||||||| || | |||||||||||| |||||||||||||||||    
T  1459593 ggatatttgggttatgaaagattttggaaataaagaatcttggactaaattgtt 1459540  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    ||||| |||||||||| |||||||||| ||||| ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 9819646 - 9819605
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgta 455  Q
    ||||||||||| |||||||||||||||||||| ||| |||||    
T  9819646 gttgagagtttgatatcaccttgttcttaatgttagtatgta 9819605  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 4183052 - 4183000
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  4183052 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4183000  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 4743896 - 4743844
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  4743896 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 4743844  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 17368366 - 17368418
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||||| | ||||| |||||||||||| |||  |||||||||||||||||    
T  17368366 gatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtt 17368418  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 89147 - 89194
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaattgt 237  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

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Target: scaffold0044; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 459
Target Start/End: Original strand, 89396 - 89440
Alignment:
Q  415 ttgagagtttaatatcaccttgttcttaatgctagaatgtagatg 459  Q
    |||||||||| |||||||||||||||||| | ||| |||||||||    
T  89396 ttgagagtttgatatcaccttgttcttaacgttaggatgtagatg 89440  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 32380 - 32330
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 236  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| |||||||    
T  32380 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 51381502 - 51381452
Alignment:
Q  190 tttggattatgaaggagtatggaaataaagattcttggactaaattgttca 240  Q
    ||||||||||||| || ||||||||| |||| |||||||||||||||||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttca 51381452  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 51858606 - 51858658
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||||||| |||||||| |||||||||  ||| |||||||||||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgtt 51858658  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttgg 227  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 51782799 - 51782848
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaatt 235  Q
    |||||||||||||||||||| ||||||||| || | ||||||| ||||||    
T  51782799 gatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 51756801 - 51756749
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||||||| |||||||| |||||||||  | | |||||||||||||||||    
T  51756801 gatgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgtt 51756749  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 51854947 - 51854999
Alignment:
Q  186 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgtt 238  Q
    ||||||||||| ||||| || |||||||||  ||| |||||||||||||||||    
T  51854947 gatgtttggatcatgaaagaatatggaaatgtagaatcttggactaaattgtt 51854999  T

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Target: scaffold1004 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 2387 - 2451
Alignment:
Q  415 ttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgaga 479  Q
    |||||||| ||||||||||||||| |||||| || |||||||| || |   ||||||||||||||    
T  2387 ttgagagtctaatatcaccttgtttttaatgttataatgtagacgttggtttatgtcacttgaga 2451  T

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Target: scaffold0760 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 4882 - 4946
Alignment:
Q  415 ttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgaga 479  Q
    |||||||| ||||||||||||||| |||||| || |||||||| || |   ||||||||||||||    
T  4882 ttgagagtctaatatcaccttgtttttaatgttataatgtagacgttggtttatgtcacttgaga 4946  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 478
Target Start/End: Original strand, 19728112 - 19728176
Alignment:
Q  414 gttgagagtttaatatcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag 478  Q
    ||||||||||| ||||||||||||   |||||| |  || |||||||||||||||||||| ||||    
T  19728112 gttgagagtttgatatcaccttgtctgtaatgcaaagatttagatgtggtgctatgtcacctgag 19728176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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