View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_high_8 (Length: 407)
Name: NF3475_high_8
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 41704246 - 41704623
Alignment:
| Q |
18 |
gaaacctcattaagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaactt |
117 |
Q |
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| T |
41704246 |
gaaacctcattaagcacttgttgtgtgcttttaaggttaccaactctagctttcttgacagctacaatagttccatcttgtagttcacctttgtaaactt |
41704345 |
T |
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| Q |
118 |
ccccaaagccaccacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctcc |
217 |
Q |
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| T |
41704346 |
ccccaaagccaccacttcctaggatcctgtcttgtgaaaaacagtttgttgctttcttcaactctttcagttgaaacattttgtaaggtttctcccctcc |
41704445 |
T |
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| Q |
218 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaat |
317 |
Q |
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| T |
41704446 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctccctgtagttagagtgtttgaaggactttgtgatgatcacaagaatcacagccaat |
41704545 |
T |
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| Q |
318 |
gnnnnnnnngcaataaccactattgagacaaccaagctggttttccatttggattctctcttgtaccttacacaggtt |
395 |
Q |
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| T |
41704546 |
gaaaaaaaagcaataaccactattgaaacaaccaagctggttttccatttggattctctcttgtaccttacacaggtt |
41704623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 1440620 - 1440672
Alignment:
| Q |
218 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctccctgtagt |
270 |
Q |
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| T |
1440620 |
agtgcttggtttcagcagaatttctctttctttggtctgctactcccggtagt |
1440672 |
T |
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