View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_low_1 (Length: 915)
Name: NF3475_low_1
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 273 - 898
Target Start/End: Original strand, 12867255 - 12867880
Alignment:
| Q |
273 |
ggtgaattactcaatttcttaggaggaattagtggt------gatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttatt |
366 |
Q |
| |
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|||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
12867255 |
ggtgaattactcaatttcttagcaggaactagttgtagttgtgatgatcttaaggagcgaagccaagttttgtatgataaagtgaagaacaagtttcatt |
12867354 |
T |
|
| Q |
367 |
ctgataagaacttcttcgtgtgtgtgatccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatata |
466 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12867355 |
ctgataagaacttcttcgtgt--gtgatccaaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcacttttattggtaatata |
12867452 |
T |
|
| Q |
467 |
gaaataaaataaaatattt--tgtgtatgtgataaaattttgagttaactctcaatatcaattccttaacgagattaattgtta-----taatcgtgata |
559 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
12867453 |
gaaataaaataaaatattttatgtgtatgtgataaaattttgagttaactctcaatatcaattccttaacgagattaattgttatgtactaatggtgata |
12867552 |
T |
|
| Q |
560 |
ttcttaattatacgtacgtgtgtgaattgaaagttagaaattgcattcatttagcttttttatttattctaagatgtattactgattttttaatgtgaaa |
659 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12867553 |
ttcttaatt----ttacgtgtgtgagttgaaagttagaaattgcattcatttagcttttttatttattctaagatgtattactgattttttaatgtgaaa |
12867648 |
T |
|
| Q |
660 |
accaataatccaacacagggtataccatttgaatttgccaagaaatatctgcataggatgaaaggaagaaaggttactctttttgttgatcaaaacaaaa |
759 |
Q |
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| T |
12867649 |
accaataatccaacacagggtataccatttgaa------agtaaatttattc-taggatgaaaggaagaaaggttactctttttgttgatcaaaacaaaa |
12867741 |
T |
|
| Q |
760 |
catggaatgttgattttaatatcacttcaaataatcaatatacactaagtggtggttggagtaaatttcgagttcacaataatttgaaatttggtgatat |
859 |
Q |
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| T |
12867742 |
catggaatgttgattttaatatcacttcaaataatcaatatacactaagtggtggttggagtaaatttcgagctcacaataatttgaaatttggtgatat |
12867841 |
T |
|
| Q |
860 |
atgtgtttttatgctaaacaaatgcaaagaaaccatttc |
898 |
Q |
| |
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| T |
12867842 |
aagtgtttttatgctaaacaaatgcaaagaaaccatttc |
12867880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 12867000 - 12867161
Alignment:
| Q |
17 |
tcatcacggcgaggtaaaaggccaaaatcttcatcaccagattctggagtttctaagaagatgaaaaataatccagaggaacaaaaagaatctaagcatg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
12867000 |
tcatcacggcgaggtaaaaggccaaaatcttcatcaccgtcttctggagtttctaagaagatgaaaaacaatccagaagaacaaaaagaatctaagcatg |
12867099 |
T |
|
| Q |
117 |
agaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatggttgg |
178 |
Q |
| |
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| T |
12867100 |
agaagagaaaagtccaagcacatgcaagatttcataattttaaggatgtggacaatggttgg |
12867161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 837 - 892
Target Start/End: Complemental strand, 12965407 - 12965352
Alignment:
| Q |
837 |
aataatttgaaatttggtgatatatgtgtttttatgctaaacaaatgcaaagaaac |
892 |
Q |
| |
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||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||| |
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| T |
12965407 |
aataatttgaaatttggtgatgtttgtgtttttgtgctaaacaaaggcaaagaaac |
12965352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 577 - 888
Target Start/End: Original strand, 49743871 - 49744183
Alignment:
| Q |
577 |
gtgtgtgaattgaaagttagaaattgcattcatttagcttttt--tatttattctaagatgtattactgattttttaatgtgaaaaccaataatccaaca |
674 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| |||| |||||||||| || |||||| ||||| ||||||||| |||| ||| ||| || | |
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| T |
49743871 |
gtgtgtgcattgaaagttagaaattgcatccatttagccttttagtatttattctgagttgtattgctgatattttaatgtataaac-aatgatctaaaa |
49743969 |
T |
|
| Q |
675 |
cagggtataccatttgaatttgccaagaaatatctgcataggatgaaaggaagaaaggttactctttttgttgatcaaaacaaaacatggaatgttgatt |
774 |
Q |
| |
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|||| |||||| |||||||||| |||||| ||||||| |||||| |||||||||| |||||||||||||||||||| ||| | ||||||||| ||||| |
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| T |
49743970 |
tagggcataccaattgaatttgctaagaaacatctgcacaggatggaaggaagaaatattactctttttgttgatcaagacagaccatggaatgctgatt |
49744069 |
T |
|
| Q |
775 |
ttaatatcacttcaaataatcaatatacactaagtggtggttggagtaaatttcgagttcacaataatttgaaatttggtgatatatgtgtttttatgct |
874 |
Q |
| |
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| ||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
49744070 |
tgaatctcactttaaataatcaatatacactaagtggtggttggagtaaatttcgtgctcacaataatttgaagtttggtgatatctgtgtttttatgct |
49744169 |
T |
|
| Q |
875 |
aaacaaatgcaaag |
888 |
Q |
| |
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||||||||||||| |
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| T |
49744170 |
gaacaaatgcaaag |
49744183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 296 - 454
Target Start/End: Original strand, 49743134 - 49743292
Alignment:
| Q |
296 |
aggaattagtggtgatgatcttaaggagcgaagccaagttttgtatgataaagtcaagaacaagttttattctgataagaacttcttcgtgtgtgtgatc |
395 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||| |||||||||| || ||||| ||||| || | |||||| | | |||||| ||||| ||||| |
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| T |
49743134 |
aggaagtagttgtgatgatcttaaggagagaagcaaagttttgtacgacaaagtgaagaattttttccacgctgatatggatttcttcatgtgtatgatc |
49743233 |
T |
|
| Q |
396 |
caaatgacatacattaaaagagatcttatggtaacaaaatattttatttgatcactttt |
454 |
Q |
| |
|
|||| |||||||||||| | |||| | ||||||||||| ||||||||||||||||||| |
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|
| T |
49743234 |
caaaagacatacattaagaaagatgtcttggtaacaaaacattttatttgatcactttt |
49743292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 49742916 - 49743020
Alignment:
| Q |
74 |
aagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatgtggacaatg |
173 |
Q |
| |
|
|||||||||| ||| || | |||||||||||| ||||||||||||||||||||||||||| ||| | ||| |||| ||| || |||||| |||||||| |
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| T |
49742916 |
aagatgaaaatcaattcaaaagaacaaaaagaacctaagcatgagaagagaaaagtccaagaacaaggaaggtttcttaacttcaaggatacggacaatg |
49743015 |
T |
|
| Q |
174 |
gttgg |
178 |
Q |
| |
|
||||| |
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|
| T |
49743016 |
gttgg |
49743020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 15134284 - 15134395
Alignment:
| Q |
65 |
gtttctaagaagatgaaaaataatccagaggaacaaaaagaatctaagcatgagaagagaaaagtccaagcacatgcaagatttcgtaattttaaggatg |
164 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||| || | ||||| | || |||| ||||| ||||||||||||| |
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|
| T |
15134284 |
gtttgtaagaagatgaaaatcaacccagaggaacaaaaagaatctaagcatgagaagaaaatattccaatctcaagcaaaatttcataattttaaggata |
15134383 |
T |
|
| Q |
165 |
tggacaatggtt |
176 |
Q |
| |
|
|| ||||||||| |
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| T |
15134384 |
tgaacaatggtt |
15134395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 738 - 887
Target Start/End: Original strand, 15135696 - 15135845
Alignment:
| Q |
738 |
ctttttgttgatcaaaacaaaacatggaatgttgattttaatatcacttcaaataatcaatatacactaagtggtggttggagtaaatttcgagttcaca |
837 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||| || ||||| |||||| |||| | |||||| ||||||||||| |||| | | ||||| |
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| T |
15135696 |
ctttttgttgatcaagatagaacatggaatgttgatttggatctcactctaaataaacaatttgcactaacaagtggttggagtgaattctgtgctcaca |
15135795 |
T |
|
| Q |
838 |
ataatttgaaatttggtgatatatgtgtttttatgctaaacaaatgcaaa |
887 |
Q |
| |
|
|||||||||||||||||||| | |||| |||| ||||| ||||||||||| |
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| T |
15135796 |
ataatttgaaatttggtgatgtttgtgcttttttgctacacaaatgcaaa |
15135845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 15134613 - 15134662
Alignment:
| Q |
401 |
gacatacattaaaagagatcttatggtaacaaaatattttatttgatcac |
450 |
Q |
| |
|
|||| ||||| | ||||||||| |||||||||| |||||||||||||||| |
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|
| T |
15134613 |
gacacacattgagagagatcttttggtaacaaactattttatttgatcac |
15134662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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