View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_low_11 (Length: 369)
Name: NF3475_low_11
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 51294700 - 51294359
Alignment:
| Q |
1 |
aaagggaaaagaaagaactagaccaccatcatatatatataatcaaacgctgatcaagaacaactgcagtaaattattataaaactgactacaaccaaat |
100 |
Q |
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| T |
51294700 |
aaagggaaaagaaagaactagaccaccatcatatata----atcaaacgatgatcaagaacaactgcagtaaattattataaaactgactacaaccaaat |
51294605 |
T |
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| Q |
101 |
aaagaaaacattatattttacatttggggagggggattattggtaggaaaaacaagaatgaacgaagaagttaaaatgaaatttcaagaagcaatttgtt |
200 |
Q |
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| T |
51294604 |
aaagaaaacattatattttacatttggggagggggattattggtaggaaaaacaagaatgaa----gaagttaaaatgaaatttcaagaagcaatttgtt |
51294509 |
T |
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| Q |
201 |
gctcagaatcagtggctcggttggcatagaatctagcaatgaaagcagaagctttcttgtcaataccaggctcagcaacccaacgacctctgtcttcatc |
300 |
Q |
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| T |
51294508 |
gctcagaatcagtggctcggttggcatagaatctagcaatgaaagcagaagctttcttgtcaataccaggctcagcaacccaacgacctctgtcttcatc |
51294409 |
T |
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| Q |
301 |
acttgcaaatatccttctgctactgccatcatcatcataatagtaataat |
350 |
Q |
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| T |
51294408 |
acttgcaaatatccttctgctactgccatcatcatcataatagtaataat |
51294359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 19574945 - 19575032
Alignment:
| Q |
231 |
atctagcaatgaaagcagaagctttcttgtcaataccaggctcagcaacccaacgacctctgtcttcatcacttgcaaatatccttct |
318 |
Q |
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|||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||| ||||||||||||||||| || ||||| |
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| T |
19574945 |
atctagcaatgaaatcagaagctttcctatcaataccaggctcagcaacccaacaacctctatcttcatcacttgcaaacattcttct |
19575032 |
T |
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