View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_low_2 (Length: 824)
Name: NF3475_low_2
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_low_2 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 242 - 811
Target Start/End: Complemental strand, 40465026 - 40464458
Alignment:
| Q |
242 |
ggaagctttttgcgacaactttttattttagttcactataaataagctccactaaagatacttttattcgaaatatgtcatacatcattaactgtcgann |
341 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
40465026 |
ggaagctttttgcgacaactttttattttagttccctataaataaactccactaaagataattttattcgaaatatgtcatacataattaactgtcgatt |
40464927 |
T |
|
| Q |
342 |
nnnnnnattcgagattcaaacattcatttactacattgttaagtttagtttgtgtgcgacaatttattttagttacatttatttattgagtccactacct |
441 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40464926 |
ttttttattcgagattcaaacattcatttgttacattgtgaagtctagtttgtgtgcgacaatttattttagttacatttaattattgagtccactacct |
40464827 |
T |
|
| Q |
442 |
tcnnnnnnnnctcatcattacatctttccctgctgatacaaatgcatttttggaagaccctactcatatcactctctcactcacacgcgcaaaagctgtt |
541 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40464826 |
tcaaaaaaa-ctcatcattacatctttccctgctgatacaaatgcatttttggaagaccctactcatatcactctctccctcacacgcgcaaaagctgtt |
40464728 |
T |
|
| Q |
542 |
tataactttactattgtttcagtgataatttggtatatactatgctgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatca |
641 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40464727 |
tataactttactattgtttcagtgataatttgttatatactatgctgcagcttactggtgaaacagtaggagaagtgaaagcagtagctgacatgcatca |
40464628 |
T |
|
| Q |
642 |
aaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggtacaaccttctttctagctccaatatttttctcatggatggtgtg |
741 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40464627 |
aaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggtacaaccttctttctagctcaaatatttttctcatggatggtgtg |
40464528 |
T |
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| Q |
742 |
gaatttaaattccaataggtgattcattaaggcacatgtcaaaagaattaccgatcgaactagcgagtct |
811 |
Q |
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| T |
40464527 |
gaatttaaattccaataggtgattcattaaggcacatgtcaaaagaattaccggtcaaactagcgagtct |
40464458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 40465150 - 40465088
Alignment:
| Q |
117 |
cctatcataaatttaagcttggccatataaatctaatatttaattcgttcaacaataattgtc |
179 |
Q |
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| T |
40465150 |
cctatcataaatttaagcttggccatataaatctaatatttaattcgttcaacaataattgtc |
40465088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 40465260 - 40465190
Alignment:
| Q |
7 |
catattacaccctttagattctcattggcattatccnnnnnnnatattctttatcatcattgaggaagtaa |
77 |
Q |
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| T |
40465260 |
catattacaccctttagattctcattggcattatcctttttttatattctttatcatcattgaggaagtaa |
40465190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 694
Target Start/End: Original strand, 77694 - 77801
Alignment:
| Q |
587 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
686 |
Q |
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||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
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| T |
77694 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
77793 |
T |
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| Q |
687 |
accaggtt |
694 |
Q |
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|||||||| |
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| T |
77794 |
accaggtt |
77801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 694
Target Start/End: Complemental strand, 40888590 - 40888483
Alignment:
| Q |
587 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
686 |
Q |
| |
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||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
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| T |
40888590 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
40888491 |
T |
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| Q |
687 |
accaggtt |
694 |
Q |
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|||||||| |
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| T |
40888490 |
accaggtt |
40888483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 697
Target Start/End: Original strand, 21626639 - 21626732
Alignment:
| Q |
604 |
acagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggt |
697 |
Q |
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||||| ||||||||||| |||||||| | |||||||||||| |||||||| ||| ||| |||||||||| ||||| || ||||||||||||| |
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| T |
21626639 |
acagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggttggt |
21626732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 694
Target Start/End: Complemental strand, 28270827 - 28270720
Alignment:
| Q |
587 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
686 |
Q |
| |
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||||||| |||||| |||| || |||||||| ||||| ||||| || |||||||||||||| || || ||| ||| |||| ||||| ||||| || || |
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| T |
28270827 |
tgcagctaactggtgaaacggtgggagaagtaaaagctgtagcagatatgcatcaaaggaaggcagagatggctaagcattcagatgcttttattgcctt |
28270728 |
T |
|
| Q |
687 |
accaggtt |
694 |
Q |
| |
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|||||||| |
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| T |
28270727 |
accaggtt |
28270720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 25026961 - 25026912
Alignment:
| Q |
613 |
gaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctag |
662 |
Q |
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||||||| ||| ||| |||| |||||||||||||||||||||||| |||| |
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| T |
25026961 |
gaagtgagagctgtatctgatatgcatcaaaggaaagctgaaatggctag |
25026912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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