View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_low_3 (Length: 619)
Name: NF3475_low_3
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 242 - 600
Target Start/End: Complemental strand, 40465026 - 40464669
Alignment:
| Q |
242 |
ggaagctttttgcgacaactttttattttagttcactataaataagctccactaaagatacttttattcgaaatatgtcatacatcattaactgtcgann |
341 |
Q |
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| T |
40465026 |
ggaagctttttgcgacaactttttattttagttccctataaataaactccactaaagataattttattcgaaatatgtcatacataattaactgtcgatt |
40464927 |
T |
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| Q |
342 |
nnnnnnattcgagattcaaacattcatttactacattgttaagtttagtttgtgtgcgacaatttattttagttacatttatttattgagtccactacct |
441 |
Q |
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| T |
40464926 |
ttttttattcgagattcaaacattcatttgttacattgtgaagtctagtttgtgtgcgacaatttattttagttacatttaattattgagtccactacct |
40464827 |
T |
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| Q |
442 |
tcnnnnnnnnctcatcattacatctttccctgctgatacaaatgcatttttggaagaccctactcatatcactctctcactcacacgcgcaaaagctgtt |
541 |
Q |
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| T |
40464826 |
tcaaaaaaa-ctcatcattacatctttccctgctgatacaaatgcatttttggaagaccctactcatatcactctctccctcacacgcgcaaaagctgtt |
40464728 |
T |
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| Q |
542 |
tataactttactattgtttcagtgataatttggtatatactatgctgcagcttactggt |
600 |
Q |
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| T |
40464727 |
tataactttactattgtttcagtgataatttgttatatactatgctgcagcttactggt |
40464669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 40465150 - 40465088
Alignment:
| Q |
117 |
cctatcataaatttaagcttggccatataaatctaatatttaattcgttcaacaataattgtc |
179 |
Q |
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| T |
40465150 |
cctatcataaatttaagcttggccatataaatctaatatttaattcgttcaacaataattgtc |
40465088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 40465260 - 40465190
Alignment:
| Q |
7 |
catattacaccctttagattctcattggcattatccnnnnnnnatattctttatcatcattgaggaagtaa |
77 |
Q |
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| T |
40465260 |
catattacaccctttagattctcattggcattatcctttttttatattctttatcatcattgaggaagtaa |
40465190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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