View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_low_6 (Length: 484)
Name: NF3475_low_6
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 8153368 - 8153823
Alignment:
| Q |
16 |
atttgctcaaggtgtaatggtgactaaagtgagtcgaaagataatctcaaagtgaaactcccttgttttgcaagtaaagaaagaagaagataagaatgat |
115 |
Q |
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| T |
8153368 |
atttgctcaaggtgtaatggtgactaaagtgagtcgaaagataatctcaaagtgaaactcccttgttttgcaagtaaagaaagaagaagataagaatgat |
8153467 |
T |
|
| Q |
116 |
gcagtaagcaattccctgagatttcagacaaccgagaaaaaggaggggcccacattcacatttttataagctattgcgtactcttccatttaatattaaa |
215 |
Q |
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| T |
8153468 |
gcagtaagcaattccctgagatttcagacaaccgagaaaaaggaggggcccacattcacatttttataagctattgcgtactctaccatttaatattaaa |
8153567 |
T |
|
| Q |
216 |
atcctaaacattcccaacacaaatccaataaatccacatctagatagagtgtttttcttctctatttcaagttacttgttcc-nnnnnnnnnngttcaat |
314 |
Q |
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| T |
8153568 |
atcctaaacattcccaacacaaatccaataaatccacatctagatagagtgtttttcttctctatttcaagttacctgttcctttttttttttgttcaat |
8153667 |
T |
|
| Q |
315 |
atcaatatatatgggtgtttgtgatgtagtagcgagtaatcttacaataatctatgtggcagttacatcatttgttaaggcttatgaagttttatatgga |
414 |
Q |
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| T |
8153668 |
atcaatatatatgggtgtttgtgatgtagtagcgagtaaccttacaataatctatgtggcagttacatcatttgttaaggcttatgaagttttatatgga |
8153767 |
T |
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| Q |
415 |
cgaagatttagtggtgtgtttgttgtgactgtgtctacaacgttggtggctttgat |
470 |
Q |
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| T |
8153768 |
cgaagatttagtggtgtgtttgttgtgactgtgtctacaacgttggtggctttgat |
8153823 |
T |
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