View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_low_8 (Length: 461)
Name: NF3475_low_8
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 33964567 - 33964300
Alignment:
| Q |
13 |
cagacgaggaggaatggaacattggtaactagatctagttcttatcattttcttaggccttggatagctatatagtaggatggtacaccttctatgctct |
112 |
Q |
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| T |
33964567 |
cagacgaggaggaatggaacactggtaactaggtctagttcttgtcattttcttaggccttggatagctatatagtaggatggtacaccttctatgctct |
33964468 |
T |
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| Q |
113 |
tagaaattaaggaatgggnnnnnnnttgagcaaagatcttgtaacgcttacctaaattttttgaagcataattatcttgaagtccatttgtcgtagttag |
212 |
Q |
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| T |
33964467 |
tagaaagtaaggaatgggaaaaaaattgagcaaagatcttgtaacgcttacctaaaatttttgaagcataa-tatcttgaagtccatttgtcgtagttag |
33964369 |
T |
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| Q |
213 |
ggttcttatagtgtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatgttattc |
281 |
Q |
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| T |
33964368 |
ggttcttatagtgtttgaaggttgtattccaaatttcatgatattgaaaagtccattggtatggtattc |
33964300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 314 - 444
Target Start/End: Complemental strand, 33964124 - 33963994
Alignment:
| Q |
314 |
atattcaaatgaatcatgtgatacaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgaa |
413 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33964124 |
atattcaaatgaatcatgtgatgcaaatcaaagaaaacaaacagacaatatgatgaacacaaaaaggctagtcctaaacaagaattgtcttatatctgat |
33964025 |
T |
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| Q |
414 |
ttatttttcctgatttgattagcctctatgt |
444 |
Q |
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| T |
33964024 |
ttatttttccttatttgattagcctctatgt |
33963994 |
T |
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