View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3475_low_9 (Length: 420)
Name: NF3475_low_9
Description: NF3475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3475_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 25038787 - 25038396
Alignment:
| Q |
19 |
ctccaaattgcaagaagacataagattatgagtttttgaagtgtatcagctgctaaaaacctaaggttcattttgtaaggattgtttgatgctatgaaat |
118 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25038787 |
ctccaaatagcaagaagacataagattatgagtttttgaagtgtatcagctgctaaaaacctaaggttcattttgtaaggattgtttgatgctatgaaat |
25038688 |
T |
|
| Q |
119 |
ggaatgaaagaagtggaactgcaaagagtgcaacaaaacggttgattcctgaacattgatcaggtgaaaatattttccaccattttactgatccataagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25038687 |
ggaatgaaagaagtggaactgcaaagagtgcaacaaaacggttgattcctgaacattgatcaggtgaaaatattttccaccattttactgatccataagc |
25038588 |
T |
|
| Q |
219 |
taagatcatagctacataaagtggcaccattgctgtcatgacatggtagaaatctgttaaagtgatcatgtttttgtgttgaggtttgaagaagaaagtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25038587 |
taagatcatagctacataaagtggcaccattgctgtcatgacatggtagaaatctgttaaagtgatcatgtttttgagttgaggtttgaagaagaaagtt |
25038488 |
T |
|
| Q |
319 |
tgagttttagtggaagaagaataaagggtaagagagnnnnnnngagtttgaagtttgtgttatgagagatagggttggtggttgtgatgatg |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25038487 |
tgagttttagtggaagaagaataaagggtaagagagaaaaaaagagtttgaagtttgtgttatgagagatagggttggtggttgtgatgatg |
25038396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 84 - 287
Target Start/End: Complemental strand, 45361902 - 45361699
Alignment:
| Q |
84 |
gttcattttgtaaggattgtttgatgctatgaaatggaatgaaagaagtggaactgcaaagagtgcaacaaaacggttgattcctgaacattgatcaggt |
183 |
Q |
| |
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||||||||||||||||||||| || || ||||||||||||||||| | ||||||||||| || ||||| || || ||||| || || |||||||| || |
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| T |
45361902 |
gttcattttgtaaggattgttagaggcaatgaaatggaatgaaagtaaaggaactgcaaacagagcaacgaagcgattgatgccggagcattgatcggga |
45361803 |
T |
|
| Q |
184 |
gaaaatattttccaccattttactgatccataagctaagatcatagctacataaagtggcaccattgctgtcatgacatggtagaaatctgttaaagtga |
283 |
Q |
| |
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|| ||||| ||||||||||| ||||| ||||||||||| |||||||| || |||||||||||||||| |||||| |||||||||||||||||||| || | |
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| T |
45361802 |
gagaatatcttccaccatttcactgaaccataagctaatatcatagccacgtaaagtggcaccattgatgtcatcacatggtagaaatctgttaacgtta |
45361703 |
T |
|
| Q |
284 |
tcat |
287 |
Q |
| |
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|||| |
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|
| T |
45361702 |
tcat |
45361699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 51 - 266
Target Start/End: Complemental strand, 34970922 - 34970707
Alignment:
| Q |
51 |
tttttgaagtgtatcagctgctaaaaacctaaggttcattttgtaaggattgtttgatgctatgaaatggaatgaaagaagtggaactgcaaagagtgca |
150 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||| ||||||||||||| | || ||||| |||||||| ||||||||||||||||| ||||| |
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| T |
34970922 |
tttttgaagtgaatcagctgctatgaacctgtagttcatagtgtaaggattgttggttgagatgaagtggaatgagagaagtggaactgcaaaaagtgct |
34970823 |
T |
|
| Q |
151 |
acaaaacggttgattcctgaacattgatcaggtgaaaatattttccaccattttactgatccataagctaagatcatagctacataaagtggcaccattg |
250 |
Q |
| |
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||||||||||| || |||||||||||||| |||| || ||||||||||||||||| || ||||| || | |||||| |||||||| ||||| || | || |
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| T |
34970822 |
acaaaacggtttatgcctgaacattgatctggtgtgaagattttccaccattttacagaaccataggcaaggatcattgctacatagagtggtactactg |
34970723 |
T |
|
| Q |
251 |
ctgtcatgacatggta |
266 |
Q |
| |
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|||| | ||||||||| |
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| T |
34970722 |
ctgtgaggacatggta |
34970707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 33102135 - 33101939
Alignment:
| Q |
46 |
atgagtttttgaagtgtatcagctgctaaaaacctaaggttcattttgtaaggattgtttgatgctatgaaatggaatgaaagaagtggaactgcaaaga |
145 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||| |||||| ||||| || |||| | |||||||| || || ||||| |||||||| || | |
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| T |
33102135 |
atgattttttgaagtgtatcagctgcgatgaacctatagttcatggcataagggttatttgtggagatgaaatgaaaggatagaagaggaactgcgaaaa |
33102036 |
T |
|
| Q |
146 |
gtgcaacaaaacggttgattcctgaacattgatcaggtgaaaatattttccaccattttactgatccataagctaagatcatagctacataaagtgg |
242 |
Q |
| |
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|| || |||||||| || || |||||||| || ||||| |||||||||||||| ||| || ||||| ||||||||||| ||||| |||||||| |
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| T |
33102035 |
tcgcgacgaaacggtttatgccggaacattggtccggtgagaatattttccaccaccgtacggagccataggctaagatcatggctacgtaaagtgg |
33101939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 52711005 - 52710911
Alignment:
| Q |
151 |
acaaaacggttgattcctgaacattgatcaggtgaaaatattttccaccattttactgatccataagctaagatcatagctacataaagtggcac |
245 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||| || |||||||||||| || || ||||| ||||| |||||||| ||||| |||||||| |
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| T |
52711005 |
acaaaacggtttattccagaacattgatctggtgtgaagattttccaccatcggaccgaaccatatgctaatatcatagcgacatatagtggcac |
52710911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 16761364 - 16761467
Alignment:
| Q |
133 |
ggaactgcaaagagtgcaacaaaacggttgattcctgaacattgatcaggtgaaaatattttccaccattttactgatccataagctaagatcatagcta |
232 |
Q |
| |
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||||||||||| | ||| ||||||||||| || || | ||||||||| |||| ||| |||||||||||||| | ||| ||||| |||| ||||| |||| |
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| T |
16761364 |
ggaactgcaaacattgccacaaaacggtttataccagcacattgatctggtgtaaagattttccaccatttaattgacccatagcctaatatcatggcta |
16761463 |
T |
|
| Q |
233 |
cata |
236 |
Q |
| |
|
|||| |
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|
| T |
16761464 |
cata |
16761467 |
T |
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