View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3476_high_10 (Length: 317)
Name: NF3476_high_10
Description: NF3476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3476_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 58 - 288
Target Start/End: Complemental strand, 42570388 - 42570157
Alignment:
| Q |
58 |
gtcagtgaacgacaaatgaagtgaagaagacgaacacaattcagagcttaacttaggtaatgtcatttataatctttcaaatcctaattattactatgaa |
157 |
Q |
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| T |
42570388 |
gtcagtgaacaacaaatgaagtgaagaagacgaacacaattcagagcttaacttaggtaatgtcatttataatctttcaaatcctaattattactatgaa |
42570289 |
T |
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| Q |
158 |
atgaaatttcttgattcattcatcactgctatgcgtattaattaaattgttgtaatgtaatgttaatgtctgcagaatacaatataattgaa-aaaatta |
256 |
Q |
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| T |
42570288 |
atgaaatttcttgattcattcatcactgctatgcgtattaattaaattgttgtaatgtaatgttaatgtttgcagaatacaatataattgaaaaaaatta |
42570189 |
T |
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| Q |
257 |
gagtagtgagaaattagggtttgagtagaaaa |
288 |
Q |
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| T |
42570188 |
gagtagtgagaaattagggtttgagtagaaaa |
42570157 |
T |
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