View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3476_high_2 (Length: 376)
Name: NF3476_high_2
Description: NF3476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3476_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 208 - 363
Target Start/End: Complemental strand, 12667972 - 12667817
Alignment:
| Q |
208 |
atagggtgctggaggacctgatgatgatgataacagatggccaccatggttgaaaccattgttgaaagaagctttctttgttcaatgcaagatacatgct |
307 |
Q |
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| T |
12667972 |
atagggtgctggaggacctgatgatgatgataacagatggccaccatggttgaaaccattgttgaaagaagctttctttgttcaatgcaagatacatgct |
12667873 |
T |
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| Q |
308 |
gattctcacaagagtgaatgtaacatgtattgtttggattgtatgaatggtcctct |
363 |
Q |
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| T |
12667872 |
gattctcacaagagtgaatgtaacatgtattgtttggattgtatgaatggtcctct |
12667817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 121
Target Start/End: Complemental strand, 12668150 - 12668058
Alignment:
| Q |
29 |
aattgaaaatcaagaaaacaccagtgtcagagaaatcaaaccaaagaaccggagaatcatggtatgcacaatctaccactagattcttaatgg |
121 |
Q |
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| T |
12668150 |
aattgaaaatcaagaaaataccagtgtcagagaaatcaaaccaaagaacaggagaatcatggtatgcacaatctaccactagattcttaatgg |
12668058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 357
Target Start/End: Original strand, 1251802 - 1251878
Alignment:
| Q |
281 |
ttctttgttcaatgcaagatacatgctgattctcacaagagtgaatgtaacatgtattgtttggattgtatgaatgg |
357 |
Q |
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| T |
1251802 |
ttctttgttcaatgcaaagtgcatgcagattccaacaaaagtgaatgcaatatgtattgcttggactgtatgaatgg |
1251878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 210 - 369
Target Start/End: Complemental strand, 27797305 - 27797146
Alignment:
| Q |
210 |
agggtgctggaggacctgatgatgatgataacagatggccaccatggttgaaaccattgttgaaagaagctttctttgttcaatgcaagatacatgctga |
309 |
Q |
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| T |
27797305 |
agggtgctggaggtcctgatgatgaggaaaacaggtggccaccatggttgaaacctctgctgaaagagcgtttctttgttcaatgcaagttgcatgctga |
27797206 |
T |
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| Q |
310 |
ttctcacaagagtgaatgtaacatgtattgtttggattgtatgaatggtcctctctgctc |
369 |
Q |
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| T |
27797205 |
ttcacacaagagtgagtgcaatatgtattgtttggattgtatgaatggtgctctttgctc |
27797146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 22316274 - 22316338
Alignment:
| Q |
264 |
cattgttgaaagaagctttctttgttcaatgcaagatacatgctgattctcacaagagtgaatgt |
328 |
Q |
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| T |
22316274 |
cattgttgaaagaagctctctttgttcaataaaaaatacatgttgattctcacaagagtgaatgt |
22316338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 350
Target Start/End: Complemental strand, 30094910 - 30094805
Alignment:
| Q |
245 |
tggccaccatggttgaaacca-ttgttgaaagaagctttctttgttcaatgcaagatacatgctgattctcacaagagtgaatgtaacatgtattgtttg |
343 |
Q |
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| T |
30094910 |
tggccaccatggttgcaaccacttcttcaaacaag-tttctttgttcaatgcaaagtccactcagattcacacaagagtgaatgcaatatgtattgcttg |
30094812 |
T |
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| Q |
344 |
gattgta |
350 |
Q |
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| T |
30094811 |
gattgta |
30094805 |
T |
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