View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3476_high_3 (Length: 361)
Name: NF3476_high_3
Description: NF3476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3476_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 41481837 - 41481505
Alignment:
| Q |
1 |
gttggtgtgggacggtggtgtttcggcaagtccatgccggcgacggtggcggaggaacttcaactccggcgatgggtttgttacgttgcgttgaattgaa |
100 |
Q |
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| T |
41481837 |
gttggtgtgggacggtggtgtttcggcaagtccatgccggcgacggtggcggaggaacttcaactccggcgatgggtttgttacgttgcgttgaattgaa |
41481738 |
T |
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| Q |
101 |
gattaccaaacgttcgttgtttgtgtgtgttaccaactgacgataataaaccgattgatttcgtaatcatcatcaaataatcaaatcaattctgacacat |
200 |
Q |
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| T |
41481737 |
gattaccaaacgttcgttgtttgtgtgtgttaccaactgacgataataaaccgattgatttcgtaatc---atcaaataatcaaatcaattctgacacat |
41481641 |
T |
|
| Q |
201 |
cactcttcattacattatattatcatcatattatattttgtcactcttatcctattaac--nnnnnnnnatcatg-ttttttagtccgattggtgtaata |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
41481640 |
cactcttcattacattatattatcatcatattatattttgtcactcttatcctattaacttttttttttatcatgtttttttagcccgattggtgtaata |
41481541 |
T |
|
| Q |
298 |
ttttaaagaaattcaaatatttgagattaatattat |
333 |
Q |
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|| | ||||||||||||||||| ||||||||||||| |
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| T |
41481540 |
ttctgaagaaattcaaatatttaagattaatattat |
41481505 |
T |
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