View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3476_high_4 (Length: 359)
Name: NF3476_high_4
Description: NF3476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3476_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 356
Target Start/End: Original strand, 16910217 - 16910563
Alignment:
| Q |
10 |
agcaaaggatgaagagtaaaagagatgaaaaagaaatagaaaaagaccggcttagtgacttgtgtgattctgttttgctcaatatgatgaagtttatgga |
109 |
Q |
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| T |
16910217 |
agcaaaggatgaagagtaaaagagataaaaaagaaagagaaaaagaccggcttagtgacttgtgtgattctgttttgctcaatataatgaagtttatgga |
16910316 |
T |
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| Q |
110 |
cacaaaacaagttgttcaaacttgtgtattgcctactagatggaagacactttggcgaagagtcacgactcttgcattgaataattcagtatccgctcgt |
209 |
Q |
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| T |
16910317 |
cacaaaacaagttgttcaaacttgtgtattgtctactagatggaagacactttggcgaagagtcactactcttgcattgaataattcagtattcgctcgt |
16910416 |
T |
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| Q |
210 |
ggcttaccgaattataatcaatttgtgttttcagttctgtctcatcgtgacaaatcaatttctttacaagatattgttttaagaaatgaaggaggcgttg |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16910417 |
ggcttacccaattataatcaatttgtgttttcagttctgtctcatcgtgacaaatcaatttctttacaagatattgttttaagaaatgaaagaggcgttg |
16910516 |
T |
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| Q |
310 |
aacctgaacttgtggacatggtcatgaaatatgcgatgtcacataat |
356 |
Q |
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||||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
16910517 |
aacctaaacttgtggacgcggtcatgaaatatgctatgtcacataat |
16910563 |
T |
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