View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3476_high_5 (Length: 347)
Name: NF3476_high_5
Description: NF3476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3476_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 30355541 - 30355395
Alignment:
| Q |
189 |
agtaaaaaactactccagtactccaccatgtattttcgttatgtataacataaattatttannnnnnngaggaaatgtataacataaattatagatatag |
288 |
Q |
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| T |
30355541 |
agtaaaaaactactccagtactccaccatgtattttcgttatgtataacataaattatttatttttttgaggaaatgtataacataaattatagatatag |
30355442 |
T |
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| Q |
289 |
ggattttgtttttcaagggtaattgaaagcatgtgagtaagaataat |
335 |
Q |
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| T |
30355441 |
ggattttgtttttcaaggctaattgaaagcatgtgagtaagagtaat |
30355395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30356262 - 30356184
Alignment:
| Q |
1 |
actgctacgtgtctgtagctt-aagtattattggtgcaggtgtcattgcttacattggctgtttgacacgtgttgtctc |
78 |
Q |
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| T |
30356262 |
actgctacgtgtctgtagctttaagtattattggtgcaggtgtcattgcttacattggctgtttgacacgtgttgtctc |
30356184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 30356139 - 30356099
Alignment:
| Q |
124 |
aagtagaaacagtgtgcctagtctcgacatgaatcgcatta |
164 |
Q |
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| T |
30356139 |
aagtagaaacagtgtgcctagtctcgacatgaatcgcatta |
30356099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30360853 - 30360783
Alignment:
| Q |
1 |
actgctacgtgtctgtagcttaagtattattggtgcaggtgtcattgcttacattggctgtttgacacgtgt |
72 |
Q |
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| T |
30360853 |
actgctacgtgtttgcagcttaagtattattggtgcaagtgtc-ttacttgctttggcagtttgacatgtgt |
30360783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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