View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3476_high_9 (Length: 321)

Name: NF3476_high_9
Description: NF3476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3476_high_9
NF3476_high_9
[»] chr8 (14 HSPs)
chr8 (1-309)||(36202467-36202775)
chr8 (1-309)||(36207939-36208247)
chr8 (1-309)||(36184755-36185063)
chr8 (1-314)||(36196911-36197221)
chr8 (1-314)||(36213368-36213687)
chr8 (1-307)||(36201082-36201388)
chr8 (1-241)||(36199060-36199300)
chr8 (1-314)||(36210026-36210339)
chr8 (220-314)||(36214831-36214925)
chr8 (1-139)||(36188593-36188731)
chr8 (205-309)||(36188749-36188853)
chr8 (203-314)||(36183540-36183651)
chr8 (91-137)||(36183441-36183487)
chr8 (261-314)||(36199303-36199356)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36202467 - 36202775
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36202467 cttgcaacccttatgatcttcaccaaagggcataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggactgtttgcagctcc 36202566  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||||    
T  36202567 ttcatcttagcacacagtagaagagctctttctgcagttcttattcttttgttattaccgtaagacatgcaacaggatgattcagctagatcaatcttat 36202666  T
Q  201 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202667 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 36202766  T
Q  301 atctctctc 309  Q
    |||||||||    
T  36202767 atctctctc 36202775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36207939 - 36208247
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||| | ||||||||| | |    
T  36207939 cttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcatacagtacaactagtactgtttgcagtttc 36208038  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 200  Q
    || |||||||||||||| ||||||||||||||||||||| |  |||||||||||||||||||| ||| |||||| |||| ||||| |||| | |||||||    
T  36208039 tttatcttagcacacagaagaagagctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttat 36208138  T
Q  201 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 300  Q
    ||||||||||||||| |||||||  |||||| |||||||||||||   |||||||||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  36208139 catcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattg 36208238  T
Q  301 atctctctc 309  Q
    |||||||||    
T  36208239 atctctctc 36208247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 36184755 - 36185063
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||||| | ||||||||| |||    
T  36184755 cttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcc 36184854  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 200  Q
    || |||||||| ||||| ||||||||||||||||||||| |  |||||||||||||||||||| ||| |||||| |||| ||||| |||| | |||||||    
T  36184855 tttatcttagcgcacagaagaagagctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttat 36184954  T
Q  201 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 300  Q
    ||||||||||||||| |||||||  |||||| |||||||||||||   |||||||||| ||||| ||||| ||||||||||||||||||| |||||||||    
T  36184955 catcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattg 36185054  T
Q  301 atctctctc 309  Q
    |||||||||    
T  36185055 atctctctc 36185063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 36196911 - 36197221
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaagggg---ataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagc 97  Q
    ||||||||| ||||||||||| |||||||||   |||||||| |||| |||||| ||||| ||| | |||||||||| ||||||||||| ||||||||||    
T  36196911 cttgcaaccattatgatcttcaccaaagggggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaactaggactgtttgcagc 36197010  T
Q  98 tccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatct 197  Q
    || ||||||||||||||||  ||| |||||||||||||||||    |||||||  |||||||| |||||| |||||| | |||||||||| || |  |||    
T  36197011 tctttcatcttagcacacaaaagatgagctctttctgcagttgccattctttttctattaccaaaaaacatgcaacaagttgattcagctggatccgtct 36197110  T
Q  198 tatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaa 297  Q
    ||||||||||||       |||||||||||||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||| ||    
T  36197111 tatcatcaaaat------ctattgcatcaccaattagtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaataa 36197204  T
Q  298 ttgatctctctctgctc 314  Q
    |||||||||||| ||||    
T  36197205 ttgatctctctcagctc 36197221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 36213368 - 36213687
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||| ||||||||||| |||||||||| |||||| |||| |||||| ||||| ||||| ||||||||||||||||  |||| ||||||||||||     
T  36213368 cttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaatcgagtctcccatgaagatcatacattacaatcaggactgtttgcagctct 36213467  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 200  Q
    |||||||||||||| |  ||| ||||||||||||||||| |   | ||||  |||||||| || ||| |||||| | |||||| |||| |   |||||||    
T  36213468 ttcatcttagcacaaataagatgagctctttctgcagttgtcactgttttactattaccaaaacacatgcaacaagttgattcggctacattcatcttat 36213567  T
Q  201 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttg------ctgtgacaatcttttcgaa 294  Q
    ||| |||||| |||| ||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||      ||||||||||||||| |||    
T  36213568 cattaaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaatgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaa 36213667  T
Q  295 caattgatctctctctgctc 314  Q
    ||||||||||||||| ||||    
T  36213668 caattgatctctctcagctc 36213687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 36201082 - 36201388
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||| ||||||||||| |||||||||| |||||| || | |||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||    
T  36201082 cttgcaaccattatgatcttcaccaaaggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggactgtttgcagctcc 36201181  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 200  Q
    |||||||||||||| |  ||| ||||||| ||||||||| |  |||||||  |||||||| || ||| |||||| | |||||  |||    |  || |||    
T  36201182 ttcatcttagcacaaataagatgagctctatctgcagttgtcattcttttactattaccaaaacacatgcaacaagttgattttgctgcctccgtcatat 36201281  T
Q  201 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 300  Q
    ||| |||||| |||| ||||||||||||||| |||||||||||||   |||||||||||||||| ||||| |||||||||||| |||||| |||||||||    
T  36201282 cattaaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttgctgtgacagtcttttggaacaattg 36201381  T
Q  301 atctctc 307  Q
    |||||||    
T  36201382 atctctc 36201388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36199060 - 36199300
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||     
T  36199060 cttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactaggactgtttgcagctct 36199159  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 200  Q
    ||||||||||||||||| |||||||||||||||| |||| |   |||||| |||||| || || ||| |||||| |  |||||||||| | |  || |||    
T  36199160 ttcatcttagcacacagaagaagagctctttctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtat 36199259  T
Q  201 catcaaaattcagacatattgcatcaccaatttgtgtttga 241  Q
    ||||||||||||||| ||||||||| || ||| ||||||||    
T  36199260 catcaaaattcagacctattgcatccccgattagtgtttga 36199300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 36210026 - 36210339
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||| ||||||||||| ||||||||||||||||| || | |||||  |||| |||||| ||||||||||||||||  |||| ||||||||||||     
T  36210026 cttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctct 36210125  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaatcttat 200  Q
    |||||||||||||| || |||  |||||||||||||||| |  |||||||  |||||||| ||  |  |||||  | |||| | |||| |    ||||||    
T  36210126 ttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttat 36210225  T
Q  201 catcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattg 300  Q
    ||| |||||| |||| ||||||||  ||||||| ||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||| |||| | ||    
T  36210226 cattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatg 36210325  T
Q  301 atctctctctgctc 314  Q
    |||| |||||||||    
T  36210326 atctttctctgctc 36210339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 36214831 - 36214925
Alignment:
Q  220 tgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctctgctc 314  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  36214831 tgcatcaccaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctc 36214925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 36188593 - 36188731
Alignment:
Q  1 cttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgcagctcc 100  Q
    ||||||||| ||||||||||| ||||||||||||||||| || | |||||  |||| |||||| ||||||||||||||||  |||| ||||||||||||     
T  36188593 cttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctct 36188692  T
Q  101 ttcatcttagcacacagtagaagagctctttctgcagtt 139  Q
    |||||||||||||| || |||  ||||||||||||||||    
T  36188693 ttcatcttagcacaaagaagatcagctctttctgcagtt 36188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 205 - 309
Target Start/End: Original strand, 36188749 - 36188853
Alignment:
Q  205 aaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgatct 304  Q
    |||||| |||| ||||||||  ||||||| ||||||||||| |||||||||||||||||| || || |||| |||||||||||||| |||||||||||||    
T  36188749 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatct 36188848  T
Q  305 ctctc 309  Q
     ||||    
T  36188849 ttctc 36188853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 36183540 - 36183651
Alignment:
Q  203 tcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgat 302  Q
    |||||||| |||| |||||||  ||||||||||||| |||||| |||||||||  ||||||  ||||| ||||||  ||| ||||||| |||||||||||    
T  36183540 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 36183639  T
Q  303 ctctctctgctc 314  Q
    ||||||| ||||    
T  36183640 ctctctcagctc 36183651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 36183441 - 36183487
Alignment:
Q  91 ttgcagctccttcatcttagcacacagtagaagagctctttctgcag 137  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||    
T  36183441 ttgcagctccttcatcttagcacacaaaataagagctctttctgcag 36183487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 36199303 - 36199356
Alignment:
Q  261 tcttcgtcacggttgctgtgacaatcttttcgaacaattgatctctctctgctc 314  Q
    |||| ||||| |||| |||||||||||||| |||||||||||||||||| ||||    
T  36199303 tctttgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctc 36199356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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