View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3477_high_1 (Length: 657)

Name: NF3477_high_1
Description: NF3477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3477_high_1
NF3477_high_1
[»] chr8 (19 HSPs)
chr8 (13-638)||(5879660-5880286)
chr8 (13-177)||(5829457-5829621)
chr8 (13-178)||(5826851-5827016)
chr8 (373-425)||(31212490-31212542)
chr8 (297-425)||(6906262-6906390)
chr8 (354-429)||(8791894-8791969)
chr8 (304-429)||(10069995-10070121)
chr8 (354-426)||(14148393-14148465)
chr8 (373-430)||(15229609-15229666)
chr8 (373-423)||(9861568-9861618)
chr8 (373-423)||(31212313-31212363)
chr8 (373-427)||(33892032-33892086)
chr8 (373-421)||(6906479-6906527)
chr8 (373-425)||(33892242-33892294)
chr8 (354-420)||(1047259-1047325)
chr8 (316-430)||(37037252-37037365)
chr8 (199-260)||(14148417-14148478)
chr8 (181-242)||(15229619-15229680)
chr8 (353-398)||(31943180-31943225)
[»] chr7 (25 HSPs)
chr7 (177-432)||(7760598-7760854)
chr7 (304-428)||(31198434-31198558)
chr7 (304-429)||(9686286-9686413)
chr7 (354-428)||(3555360-3555434)
chr7 (374-421)||(21657506-21657553)
chr7 (313-426)||(7760742-7760856)
chr7 (373-426)||(19105460-19105513)
chr7 (275-427)||(15329853-15330007)
chr7 (296-421)||(23797172-23797298)
chr7 (358-420)||(31198302-31198363)
chr7 (304-427)||(6036544-6036668)
chr7 (313-423)||(12821179-12821289)
chr7 (313-423)||(29635235-29635345)
chr7 (181-262)||(8129882-8129962)
chr7 (383-424)||(8130114-8130155)
chr7 (181-254)||(23797224-23797297)
chr7 (352-421)||(29635688-29635757)
chr7 (373-421)||(20165047-20165095)
chr7 (376-432)||(35054436-35054492)
chr7 (171-262)||(35054438-35054529)
chr7 (181-254)||(6036551-6036624)
chr7 (373-422)||(9686491-9686540)
chr7 (373-422)||(20164620-20164669)
chr7 (181-253)||(3555368-3555440)
chr7 (391-423)||(37081156-37081188)
[»] chr4 (10 HSPs)
chr4 (297-425)||(54164595-54164724)
chr4 (304-429)||(13552663-13552790)
chr4 (358-428)||(30941514-30941583)
chr4 (304-429)||(54164460-54164586)
chr4 (304-424)||(7513526-7513647)
chr4 (176-225)||(7513525-7513574)
chr4 (304-423)||(28687597-28687716)
chr4 (373-421)||(32185283-32185331)
chr4 (373-422)||(13552868-13552917)
chr4 (354-422)||(17250463-17250531)
[»] chr3 (19 HSPs)
chr3 (349-428)||(4304138-4304217)
chr3 (373-424)||(4304353-4304404)
chr3 (373-425)||(6931146-6931198)
chr3 (359-433)||(45405092-45405166)
chr3 (373-425)||(30172069-30172121)
chr3 (271-400)||(44094174-44094306)
chr3 (359-422)||(30430271-30430334)
chr3 (176-262)||(32618958-32619044)
chr3 (358-424)||(32618977-32619043)
chr3 (359-420)||(4475108-4475169)
chr3 (373-422)||(30173658-30173707)
chr3 (359-431)||(27614006-27614078)
chr3 (358-425)||(43907910-43907976)
chr3 (374-424)||(19279899-19279949)
chr3 (373-423)||(25799528-25799577)
chr3 (181-242)||(25799514-25799574)
chr3 (373-421)||(2928096-2928144)
chr3 (377-421)||(28725280-28725324)
chr3 (373-424)||(28725716-28725770)
[»] chr6 (12 HSPs)
chr6 (359-424)||(12289979-12290044)
chr6 (359-428)||(34637616-34637685)
chr6 (373-423)||(34637425-34637475)
chr6 (373-428)||(13340649-13340704)
chr6 (354-427)||(6190565-6190637)
chr6 (373-421)||(13340445-13340493)
chr6 (359-425)||(31298916-31298982)
chr6 (372-429)||(12290174-12290230)
chr6 (359-422)||(7359611-7359674)
chr6 (375-425)||(403305-403355)
chr6 (169-225)||(12289971-12290027)
chr6 (181-225)||(12290178-12290221)
[»] chr5 (24 HSPs)
chr5 (359-424)||(13657741-13657806)
chr5 (297-421)||(22297891-22298016)
chr5 (302-427)||(6843078-6843204)
chr5 (358-429)||(29673285-29673356)
chr5 (279-428)||(2344575-2344725)
chr5 (352-420)||(29673723-29673791)
chr5 (304-429)||(25906094-25906219)
chr5 (303-419)||(17047859-17047976)
chr5 (373-423)||(2846573-2846623)
chr5 (297-422)||(25905959-25906085)
chr5 (357-426)||(2846941-2847009)
chr5 (373-422)||(2858411-2858460)
chr5 (357-426)||(2858778-2858846)
chr5 (373-421)||(22297764-22297812)
chr5 (171-247)||(29673725-29673801)
chr5 (181-244)||(2846941-2847003)
chr5 (181-244)||(2858778-2858840)
chr5 (360-399)||(15773760-15773799)
chr5 (373-428)||(20510501-20510556)
chr5 (359-428)||(13657544-13657613)
chr5 (174-243)||(29673287-29673356)
chr5 (375-427)||(5161109-5161161)
chr5 (297-424)||(17047984-17048111)
chr5 (352-424)||(24490693-24490764)
[»] chr1 (22 HSPs)
chr1 (279-426)||(30749051-30749199)
chr1 (279-426)||(30770502-30770650)
chr1 (373-438)||(23485655-23485720)
chr1 (313-425)||(14760019-14760131)
chr1 (359-423)||(30746773-30746837)
chr1 (359-423)||(30768224-30768288)
chr1 (297-418)||(13765561-13765683)
chr1 (359-423)||(30748951-30749015)
chr1 (359-423)||(30770402-30770466)
chr1 (358-429)||(15393345-15393416)
chr1 (359-425)||(16706527-16706596)
chr1 (275-333)||(30746868-30746926)
chr1 (275-333)||(30768319-30768377)
chr1 (359-421)||(51900116-51900178)
chr1 (297-425)||(16706333-16706462)
chr1 (354-435)||(20171377-20171457)
chr1 (373-426)||(22679532-22679585)
chr1 (376-425)||(39785218-39785267)
chr1 (177-226)||(39785219-39785268)
chr1 (373-421)||(23528254-23528302)
chr1 (202-254)||(30746941-30746993)
chr1 (202-254)||(30768392-30768444)
[»] chr2 (26 HSPs)
chr2 (373-428)||(7328503-7328558)
chr2 (304-420)||(981053-981169)
chr2 (349-422)||(37897734-37897807)
chr2 (349-425)||(16192595-16192671)
chr2 (297-424)||(32483645-32483773)
chr2 (375-433)||(4921371-4921429)
chr2 (359-421)||(16127920-16127982)
chr2 (291-424)||(37897574-37897708)
chr2 (377-430)||(43130353-43130405)
chr2 (376-424)||(12874679-12874727)
chr2 (373-425)||(18509495-18509547)
chr2 (352-420)||(27847860-27847928)
chr2 (373-428)||(32945607-32945662)
chr2 (172-254)||(12874674-12874756)
chr2 (373-423)||(25330560-25330610)
chr2 (374-424)||(39159300-39159350)
chr2 (373-430)||(12874886-12874943)
chr2 (304-412)||(35926736-35926844)
chr2 (358-430)||(30714116-30714187)
chr2 (373-428)||(39786311-39786366)
chr2 (359-421)||(16126222-16126284)
chr2 (181-242)||(16127921-16127982)
chr2 (178-247)||(27847857-27847926)
chr2 (181-262)||(40152702-40152782)
chr2 (376-424)||(17368879-17368927)
chr2 (181-257)||(25330563-25330639)
[»] scaffold0025 (1 HSPs)
scaffold0025 (359-424)||(64017-64082)
[»] scaffold0042 (2 HSPs)
scaffold0042 (313-424)||(30310-30421)
scaffold0042 (307-412)||(30697-30802)
[»] scaffold0328 (1 HSPs)
scaffold0328 (372-424)||(11009-11060)


Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 13 - 638
Target Start/End: Complemental strand, 5880286 - 5879660
Alignment:
Q  13 aatatagaatctaattttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaacgtc--tgattttcactcaatggtaaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  5880286 aatatagaatctaattttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaactacactgattttcactcaatggtaaaa 5880187  T
Q  111 acccaacttgagtttttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaaggattaaataagtaaattgctcccctaaataaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  5880186 acccaacttgagtttttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaaggattaaataagtaaattgttctcctaaataaa 5880087  T
Q  211 ccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctcnnnnnnnnttttatccatgaaattagttcatgctctcattgtagagta 310  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||         || ||||||||||||||||||||||||| ||||||||||    
T  5880086 ccaacatttgatttttgtccttttaaaatattccttagattttttgttcctcaaaaaaaaatt-atccatgaaattagttcatgctctcgttgtagagta 5879988  T
Q  311 gagactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactattt 410  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  5879987 gagactaatttcatggatgaaaaatgttagagggaccaaagcttaagaaatattttagaaagactaaaatcaaatattagtatatttagggagactattt 5879888  T
Q  411 acttatttaaccctaaaattaattttagttaacagtgaaattaggtttatcaaggaaataaatgatctcaggataatgatgataaatctcaagcttggta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5879887 acttatttaaccctaaaattaattttagttaacagtgaaattaggtttatcaaggaaataaatgatctcaggataatgatgataaatctcaagcttggta 5879788  T
Q  511 aggatgatgctagatgatgtgagtgtacctacaaacatcaatcaattattcaattgaggtgattnnnnnnntaaaattggaagacttccaacccggggag 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    ||||||||||||||||||||||||    
T  5879787 aggatgatgctagatgatgtgagtgtacctacaaacatcaatcaattattcaattgaggtgattaaaaatttttttttggaagacttccaacccggggag 5879688  T
Q  611 aatttgattagaagggttatgagattgg 638  Q
    ||||||||||||||||||||||||||||    
T  5879687 aatttgattagaagggttatgagattgg 5879660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 5829621 - 5829457
Alignment:
Q  13 aatatagaatctaattttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaac--gtctgattttcactcaatggtaaaa 110  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||| | |||    
T  5829621 aatatagaatccaattttagttgtcaatatcttcatgtgaattttaaaattgcatattggatatttcaagaactacactgattttcactcaatgat-aaa 5829523  T
Q  111 acccaacttgagtttttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaa 177  Q
    ||||||||||||||||| ||||||| ||||| | |||| ||||||||||||||||| ||||||||||    
T  5829522 acccaacttgagtttttggtttagtgtgttttgctttc-gttgtgaaatttaattttgtaaaattaa 5829457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 5827016 - 5826851
Alignment:
Q  13 aatatagaatctaattttagctgtcaatatcttgatgtgaattttaaaattgcatattggatatttcaagaac--gtctgattttcactcaatggtaaaa 110  Q
    ||||||||||| || ||||| |||||||||||| ||||||||||||||| |||||||||||||||| ||||||    ||||||||||||||||| | |||    
T  5827016 aatatagaatccaactttagttgtcaatatcttcatgtgaattttaaaaatgcatattggatattttaagaactacactgattttcactcaatgat-aaa 5826918  T
Q  111 acccaacttgagtttttagtttagtatgtttggttttcagttgtgaaatttaatttcgtaaaattaag 178  Q
    ||||||||||||||||| ||||||| ||||| | |||| ||||||||||||||||| |||||||||||    
T  5826917 acccaacttgagtttttggtttagtgtgttttgctttc-gttgtgaaatttaattttgtaaaattaag 5826851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 31212490 - 31212542
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31212490 actaaaatcaaatgttggtatatttagggagactatttacttatttaacccta 31212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 6906390 - 6906262
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| |||||||||  ||||||||||||||||||||||| || ||   ||| || || |||| ||||||||| |   |||||| ||||||||| ||||||    
T  6906390 ctcaatgtagagtatggactaatttcatggatgaaaaattttggaaggaccaaaagcctaaggaatattttatggggactaaa-tcaaatgttggtatat 6906292  T
Q  396 ttagggagactatttacttatttaacccta 425  Q
    |||||| |||||||||||||||||||||||    
T  6906291 ttagggggactatttacttatttaacccta 6906262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 8791894 - 8791969
Alignment:
Q  354 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 429  Q
    |||||||||||||| ||  | |||||||||||||||||||||||| |   ||||||||||||||||||||||||||    
T  8791894 taagaaatattttatgaggattaaaatcaaatgttagtatatttaagagaactatttacttatttaaccctaaaat 8791969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 304 - 429
Target Start/End: Original strand, 10069995 - 10070121
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 402  Q
    ||||| || |||||||||||| |||||||||| ||||||  ||| ||  | ||| |||||||||||||  | |||||| |||| || ||||||||||||     
T  10069995 tagagcagggactaatttcatagatgaaaaattttagagggaccaaaaacctaaaaaatattttaggaggattaaaataaaatattggtatatttagggg 10070094  T
Q  403 gactatttacttatttaaccctaaaat 429  Q
     ||||||| ||||||||||||||||||    
T  10070095 aactatttgcttatttaaccctaaaat 10070121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 14148465 - 14148393
Alignment:
Q  354 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 426  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||||| ||| | ||||||||| ||||||||    
T  14148465 taagaaatattttaggaggactaaaatcaaatgttgatatatttagggggaccacttacttattaaaccctaa 14148393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 373 - 430
Target Start/End: Complemental strand, 15229666 - 15229609
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 430  Q
    |||||||| ||||||| ||||||||| ||  |||||||||||||||||||||||||||    
T  15229666 actaaaataaaatgttggtatatttaagggaactatttacttatttaaccctaaaatt 15229609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 9861618 - 9861568
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    ||||||||||||||||  ||||||||||  |||||||||||||||||||||    
T  9861618 actaaaatcaaatgttgatatatttaggaggactatttacttatttaaccc 9861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 31212363 - 31212313
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    ||||||||||||||||  |||||||| || |||||||||||||||||||||    
T  31212363 actaaaatcaaatgttgatatatttaaggggactatttacttatttaaccc 31212313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 33892086 - 33892032
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 427  Q
    |||||||||||||||| ||||||||| |   ||||||||||||||||||||||||    
T  33892086 actaaaatcaaatgttggtatatttaagagaactatttacttatttaaccctaaa 33892032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 6906479 - 6906527
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||||||||||||||| |||||||||||| |||  ||||||||||||||    
T  6906479 actaaaatcaaatgttggtatatttagggggaccgtttacttatttaac 6906527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 33892242 - 33892294
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    |||||||||||||||| ||||||||| | ||| | ||||||||||||||||||    
T  33892242 actaaaatcaaatgttggtatatttaagaagattgtttacttatttaacccta 33892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 1047325 - 1047259
Alignment:
Q  354 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 420  Q
    |||| ||| ||||||||  | |||||| |||| |||||||||||||| |||| ||||||||||||||    
T  1047325 taaggaatgttttaggaggattaaaataaaatattagtatatttaggaagaccatttacttatttaa 1047259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 430
Target Start/End: Original strand, 37037252 - 37037365
Alignment:
Q  316 taatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttactta 415  Q
    |||||||||||||||||||| |||  | | |  |||  |||| ||||||||||    |||||||||||||||| | ||||||||  |||| |||||||||    
T  37037252 taatttcatggatgaaaaattttaagggaccaaaagtataaggaatattttagagggactaaaatcaaatgttggaatatttaga-agaccatttactta 37037350  T
Q  416 tttaaccctaaaatt 430  Q
    |||||||||| ||||    
T  37037351 tttaaccctataatt 37037365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 14148417 - 14148478
Alignment:
Q  199 cccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcc 260  Q
    |||||||||| | |||||||| ||||| |||||  ||||||||||||||| ||||| |||||    
T  14148417 cccctaaatatatcaacatttgattttagtcctcctaaaatatttcttaggtttttagttcc 14148478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 15229619 - 15229680
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatt 242  Q
    |||||||||||||| | |||| |||||| |||||||||| ||||| |||| | |||||||||    
T  15229619 ttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatatt 15229680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 31943180 - 31943225
Alignment:
Q  353 ttaagaaatattttaggaaaactaaaatcaaatgttagtatattta 398  Q
    ||||||||||||||| || |||||||||||||||||  ||||||||    
T  31943180 ttaagaaatattttaagagaactaaaatcaaatgttgatatattta 31943225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 177 - 432
Target Start/End: Complemental strand, 7760854 - 7760598
Alignment:
Q  177 aggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctcnnnnnnnnttttat 276  Q
    |||||||||||||||||| | ||||||||||| |||||||||| ||||| |||| | |||||||||||||||  |||| || ||||        ||| ||    
T  7760854 aggattaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctc-caaaaattttcat 7760756  T
Q  277 ccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaact 375  Q
    ||||||||||||| | |  ||||| ||||||| |||| ||||||||||||||||| ||| || |||  |||  |||| |||  |||||||||||   |||    
T  7760755 ccatgaaattagtccctattctcaatgtagagcagaggctaatttcatggatgaacaattttggagggaccaaaagcctaaagaatattttagggggact 7760656  T
Q  376 aaaatcaaatgttagtatatttagggagactatttacttatttaaccc-taaaattaa 432  Q
    ||||||| ||| | ||||||||||   || |||||||||||||||||| |||||||||    
T  7760655 aaaatcatatgctggtatatttagaaggattatttacttatttaacccttaaaattaa 7760598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 304 - 428
Target Start/End: Original strand, 31198434 - 31198558
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggag 403  Q
    ||||| || |||||||||||| |||||||||| ||||||   |  |||| ||||||||||||||||| ||||||||||||||||| |||||||||  | |    
T  31198434 tagagcagggactaatttcatagatgaaaaattttagagggccaaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaaggg 31198533  T
Q  404 actatttacttatttaaccctaaaa 428  Q
    |||||||||||||||||||| ||||    
T  31198534 actatttacttatttaacccaaaaa 31198558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 304 - 429
Target Start/End: Complemental strand, 9686413 - 9686286
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaact-aaaatcaaatgttagtatatttaggg 401  Q
    ||||| |||||||||||||||  ||||||||| ||||| | |||  |||||||| |||||||||  |   ||| |||||||||| |||||||||||||||    
T  9686413 tagagcagagactaatttcataaatgaaaaattttagaacgaccaaaagcttaaaaaatattttttggggactaaaaatcaaatattagtatatttaggg 9686314  T
Q  402 agactatttacttatttaaccctaaaat 429  Q
    ||| |||||||||||||||||| |||||    
T  9686313 agattatttacttatttaacccaaaaat 9686286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 428
Target Start/End: Complemental strand, 3555434 - 3555360
Alignment:
Q  354 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    ||||||||||||||||   |||||||||||||||| |||||||||||| ||| |||| |||||||||||||||||    
T  3555434 taagaaatattttagggggactaaaatcaaatgttggtatatttagggggaccatttgcttatttaaccctaaaa 3555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 21657506 - 21657553
Alignment:
Q  374 ctaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21657506 ctaatatcaaatgttagtatatttagggagactatttacttatttaac 21657553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 426
Target Start/End: Original strand, 7760742 - 7760856
Alignment:
Q  313 gactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactattta 411  Q
    ||||||||||||||||||||| | || |||  ||| || || ||||||||||||||     |||||||||||||||| ||||||||||||  ||||||||    
T  7760742 gactaatttcatggatgaaaatttttggagggaccaaaagcctaagaaatattttatagggactaaaatcaaatgttggtatatttaggggaactattta 7760841  T
Q  412 cttatttaaccctaa 426  Q
    ||||||||| |||||    
T  7760842 cttatttaatcctaa 7760856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 19105460 - 19105513
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 426  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||    
T  19105460 actaaaatcaaaagttggtatatttagggggactatttacttatttaaccctaa 19105513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 427
Target Start/End: Complemental strand, 15330007 - 15329853
Alignment:
Q  275 atccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag--cttaagaaatattttaggaaa 372  Q
    ||||||||||||||| |||| ||||| |||||||||  |||| ||||||| |||||||| | || ||   ||| ||   |||||| ||||| || ||       
T  15330007 atccatgaaattagtccatgttctcaatgtagagtatggacttatttcatagatgaaaatttttggatggaccaaaaaccttaagtaatatctttggggg 15329908  T
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 427  Q
    |||||||||||||||| ||||||||| || |||||||| | ||||||||||||||    
T  15329907 actaaaatcaaatgttggtatatttaaggggactatttccatatttaaccctaaa 15329853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 296 - 421
Target Start/End: Original strand, 23797172 - 23797298
Alignment:
Q  296 tctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtata 394  Q
    ||||| ||||||| |||||| ||||| |||||| |||| | ||||||  ||| ||  | |||||||||||||||    ||||||||||||||||  ||||    
T  23797172 tctcaatgtagagcagagaccaatttaatggataaaaagttttagagggaccaaaaatctaagaaatattttagagggactaaaatcaaatgttgatata 23797271  T
Q  395 tttagggagactatttacttatttaac 421  Q
    |||||||| ||||||||| ||||||||    
T  23797272 tttagggaaactatttacatatttaac 23797298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 31198363 - 31198302
Alignment:
Q  358 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 420  Q
    ||||||||||| |  |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  31198363 aaatattttagaaggactaaaatcaaatgttggtatatttaggga-actatttacttatttaa 31198302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 304 - 427
Target Start/End: Complemental strand, 6036668 - 6036544
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 402  Q
    |||||||||||||||||||||  ||||||||| ||||||   || ||  | ||| || ||||||| |   ||||||||||||||||  |||||||||||     
T  6036668 tagagtagagactaatttcataaatgaaaaattttagagaggccaaaaacctaaaaactattttaaggggactaaaatcaaatgttgatatatttagggg 6036569  T
Q  403 gactatttacttatttaaccctaaa 427  Q
     |||||||||||||||||| |||||    
T  6036568 aactatttacttatttaactctaaa 6036544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 313 - 423
Target Start/End: Complemental strand, 12821289 - 12821179
Alignment:
Q  313 gactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactattta 411  Q
    |||||||||||| |||||||| | |||||| |||| || || ||| ||||||||||||   | |||||||||| ||| ||||||||| || ||| |||||    
T  12821289 gactaatttcatagatgaaaatt-ttagaggaaccaaaagcctaaaaaatattttagggggattaaaatcaaacgttggtatatttaaggggaccattta 12821191  T
Q  412 cttatttaaccc 423  Q
    ||||||||||||    
T  12821190 cttatttaaccc 12821179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 313 - 423
Target Start/End: Complemental strand, 29635345 - 29635235
Alignment:
Q  313 gactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactattta 411  Q
    |||||||| |||| ||||||||| ||||||  ||| ||  | |||| |||||||||||  | |||||||||||||||  ||||||||||| ||| |||||    
T  29635345 gactaattacatgtatgaaaaattttagagggaccaaaagtctaaggaatattttagggga-ctaaaatcaaatgttgatatatttagggggaccattta 29635247  T
Q  412 cttatttaaccc 423  Q
    ||||||||||||    
T  29635246 cttatttaaccc 29635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 8129882 - 8129962
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 262  Q
    |||||||||||||| | || |||||||  |||||||||| |||||  ||||||||||||||||||| || |||| |||||||    
T  8129882 ttaaataagtaaat-gatctcctaaatctaccaacatttgattttaatccttttaaaatatttctttgacttttggttcctc 8129962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 8130114 - 8130155
Alignment:
Q  383 aatgttagtatatttagggagactatttacttatttaaccct 424  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  8130114 aatgtttgtatatttaggaagactatttacttatttaaccct 8130155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 23797297 - 23797224
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 254  Q
    ||||||| |||||| | | ||||||||| | |||||||| ||||| |||| | |||||||||||||||||||||    
T  23797297 ttaaatatgtaaatagtttccctaaatatatcaacatttgattttagtccctctaaaatatttcttagattttt 23797224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 29635688 - 29635757
Alignment:
Q  352 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    ||||| ||||||||||||| |||||||||||||||||  ||||||||||   || |||||| ||||||||    
T  29635688 cttaaaaaatattttaggagaactaaaatcaaatgttgatatatttaggacaaccatttacatatttaac 29635757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 20165047 - 20165095
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||||||||||||||| ||||||||||| |||| |||| ||||||||||    
T  20165047 actaaaatcaaatgttggtatatttaggaagaccatttccttatttaac 20165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 35054492 - 35054436
Alignment:
Q  376 aaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaa 432  Q
    ||||| ||||||||||||||||||    |||||||||||||||||||||||| ||||    
T  35054492 aaaattaaatgttagtatatttagaagaactatttacttatttaaccctaaatttaa 35054436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 35054438 - 35054529
Alignment:
Q  171 aaattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 262  Q
    ||||| ||| |||||||||||||| | ||  ||||||| || |||||||||||||  ||| |||||||||||  ||||| |||| |||||||    
T  35054438 aaatttagggttaaataagtaaatagttcttctaaatatactaacatttaattttgatccctttaaaatattctttagacttttggttcctc 35054529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 6036551 - 6036624
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 254  Q
    |||||||||||||| | ||||||||||| | |||||||| ||||| ||||  |||||||| || |||| |||||    
T  6036551 ttaaataagtaaatagttcccctaaatatatcaacatttgattttagtccccttaaaatagtttttaggttttt 6036624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 9686491 - 9686540
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    ||||||||||||| ||  ||||||||||  ||||||||||||||||||||    
T  9686491 actaaaatcaaatattgatatatttaggaggactatttacttatttaacc 9686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 20164669 - 20164620
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    |||||||||||||||| ||||||||  || ||| ||||||||||||||||    
T  20164669 actaaaatcaaatgttggtatattttaggggaccatttacttatttaacc 20164620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 3555368 - 3555440
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagatttt 253  Q
    ||||||||| |||| |  |||||||||| |||||||||| ||||| ||||   ||||||||||||||| ||||    
T  3555368 ttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatatttcttaggtttt 3555440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 423
Target Start/End: Complemental strand, 37081188 - 37081156
Alignment:
Q  391 tatatttagggagactatttacttatttaaccc 423  Q
    |||||||||||| ||||||||||||||||||||    
T  37081188 tatatttagggaaactatttacttatttaaccc 37081156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 297 - 425
Target Start/End: Original strand, 54164595 - 54164724
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| ||||||| || ||||||||||||  ||||||||| ||||||  ||| ||  | ||| ||||||||||   | |||||||||||||||| ||||||    
T  54164595 ctcaatgtagagcagtgactaatttcataaatgaaaaattttagagggaccgaaaacctaaaaaatattttatagagactaaaatcaaatgttggtatat 54164694  T
Q  396 ttagggagactatttacttatttaacccta 425  Q
    ||||||||||||||||||||||||||||||    
T  54164695 ttagggagactatttacttatttaacccta 54164724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 304 - 429
Target Start/End: Complemental strand, 13552790 - 13552663
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaact-aaaatcaaatgttagtatatttaggg 401  Q
    ||||| |||||||||||||||  ||||||||| ||||| | |||  |||||||| |||||||||  |   ||| |||||||||| |||||||||||||||    
T  13552790 tagagcagagactaatttcataaatgaaaaattttagaacgaccaaaagcttaaaaaatattttttggggactaaaaatcaaatattagtatatttaggg 13552691  T
Q  402 agactatttacttatttaaccctaaaat 429  Q
    ||| |||||||||||||||||| |||||    
T  13552690 agattatttacttatttaacccaaaaat 13552663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 358 - 428
Target Start/End: Original strand, 30941514 - 30941583
Alignment:
Q  358 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    |||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  30941514 aaatattttaggaagactaaaatcaaa-gttagtatatttagagagattatttacttatttaactctaaaa 30941583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 304 - 429
Target Start/End: Complemental strand, 54164586 - 54164460
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 402  Q
    |||||||||||||||||||||  ||||||||| |||||   ||| || || ||| | |||||||| ||  |||||||||||||||| ||||||||||       
T  54164586 tagagtagagactaatttcataaatgaaaaattttagatggaccaaaagcctaaaatatattttatgaggactaaaatcaaatgttggtatatttagaac 54164487  T
Q  403 gactatttacttatttaaccctaaaat 429  Q
    |||||||||||||||||||||| ||||    
T  54164486 gactatttacttatttaacccttaaat 54164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 424
Target Start/End: Complemental strand, 7513647 - 7513526
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttag-gg 401  Q
    ||||||| |||||||||||||  ||||||||| |||||  |||| || || ||| |||||||||| |  || |||||| ||||||| |||||||||| ||    
T  7513647 tagagtaaagactaatttcataaatgaaaaattttagatgaaccaaaagcctaaaaaatattttaaggtaattaaaattaaatgttggtatatttagagg 7513548  T
Q  402 agactatttacttatttaaccct 424  Q
    || ||||||||||||||||||||    
T  7513547 ag-ctatttacttatttaaccct 7513526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 7513525 - 7513574
Alignment:
Q  176 aaggattaaataagtaaattgctcccctaaataaaccaacatttaatttt 225  Q
    |||| |||||||||||||| ||||| ||||||| ||||||||||||||||    
T  7513525 aagggttaaataagtaaatagctcctctaaatataccaacatttaatttt 7513574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 423
Target Start/End: Original strand, 28687597 - 28687716
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 402  Q
    ||||| || ||||||||| || |||||||||| ||||||  ||| || |  ||| |||||||||||   |||||||||||||||||  ||||||||  ||    
T  28687597 tagagcagggactaattttattgatgaaaaattttagagggaccaaaaccctaaaaaatattttagagtaactaaaatcaaatgttgatatatttaaaga 28687696  T
Q  403 gactatttacttatttaaccc 423  Q
     ||||||||||||||||||||    
T  28687697 -actatttacttatttaaccc 28687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 32185331 - 32185283
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||||||||||||||| |||||||||| | ||||||||||| |||||||    
T  32185331 actaaaatcaaatgttggtatatttagagggactatttactcatttaac 32185283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 13552868 - 13552917
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    ||||||||||||| ||  ||||||||||  ||||||||||||||||||||    
T  13552868 actaaaatcaaatattgatatatttaggaggactatttacttatttaacc 13552917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 17250531 - 17250463
Alignment:
Q  354 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    |||||||||||||| |  || |||||||||||||| |||||||| |   ||| ||||||||||||||||    
T  17250531 taagaaatattttaagggaaataaaatcaaatgtttgtatatttggaaggaccatttacttatttaacc 17250463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 4304217 - 4304138
Alignment:
Q  349 aagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||| || ||| ||||| ||||||||||||||||    
T  4304217 aagcttaagaaatattttaggaggactaaaatcaaatgttggtatatttaaggggacgatttatttatttaaccctaaaa 4304138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 4304353 - 4304404
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4304353 actaaaatcaaatgttggtatatttagggagattatttacttatttaaccct 4304404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 6931146 - 6931198
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    |||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  6931146 actaaaatcaaatgttagtatatttaagaggactatttacttatttaacccta 6931198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 433
Target Start/End: Original strand, 45405092 - 45405166
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaat 433  Q
    |||||||||||   |||||||||||||||||||||||||| || |||  || |||||||||||| ||||||||||    
T  45405092 aatattttagggggactaaaatcaaatgttagtatatttaaggggacagttaacttatttaaccataaaattaat 45405166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 30172121 - 30172069
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||||||||||||    
T  30172121 actaaaatcaaatgttgatatatttagggggaccatttacttatttaacccta 30172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 44094306 - 44094174
Alignment:
Q  271 ttttatccatgaaattagttcatgct-ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttag 368  Q
    ||||||||||||||||||| |||| | |||| |||||||||| ||||||||||||| || ||| || ||| ||  |||  |||| |||||||||||||||    
T  44094306 ttttatccatgaaattagtccatgtttctcaatgtagagtagggactaatttcatgaataaaatattttaaagggaccaaaagcctaagaaatattttag 44094207  T
Q  369 gaaaactaaaatcaaatg-ttagtatatttagg 400  Q
     |  | |||||||||||| || |||||||||||    
T  44094206 aaggattaaaatcaaatgtttggtatatttagg 44094174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 30430334 - 30430271
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    ||||||||||   ||||||||||||||||| |||||||||| | ||| ||||||||||||||||    
T  30430334 aatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 32619044 - 32618958
Alignment:
Q  176 aaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 262  Q
    |||| |||||||||||||| | ||  ||||||| | |||||||| ||||| ||| || |||||||||| |||||||||| |||||||    
T  32619044 aagggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctc 32618958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 32618977 - 32619043
Alignment:
Q  358 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    ||||||||||| || ||||||||||||||||  |||||||||    |||||||||||||||||||||    
T  32618977 aaatattttagaaagactaaaatcaaatgttgatatatttagatgaactatttacttatttaaccct 32619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 4475169 - 4475108
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 420  Q
    |||||||||||  || |||||||||||||| |||||||||||  |||| |||||||||||||    
T  4475169 aatattttaggggaattaaaatcaaatgttggtatatttaggaggactttttacttatttaa 4475108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Original strand, 30173658 - 30173707
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    ||||||||||||| || ||||||||||||| ||||||| |||||||||||    
T  30173658 actaaaatcaaatattggtatatttagggaaactattttcttatttaacc 30173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 27614078 - 27614006
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatta 431  Q
    ||||||||| | | |||||||| ||||||| ||||||||||||  |||||||||||  ||||||| |||||||    
T  27614078 aatattttatggagactaaaattaaatgttggtatatttaggggaactatttacttgattaacccaaaaatta 27614006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 43907910 - 43907976
Alignment:
Q  358 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    ||||||||||||   ||||||||||||| |||||||||||| || ||  |||||||||||||||||||    
T  43907910 aaatattttagggggactaaaatcaaatattagtatatttaagg-gatcatttacttatttaacccta 43907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 424
Target Start/End: Complemental strand, 19279949 - 19279899
Alignment:
Q  374 ctaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    ||||||||||||||| ||||| ||||||  |||| ||||||||||||||||    
T  19279949 ctaaaatcaaatgttggtatacttaggggaactacttacttatttaaccct 19279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 423
Target Start/End: Original strand, 25799528 - 25799577
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||||||||    
T  25799528 actaaaattaaatgttggtatatttagggagtc-atttacttatttaaccc 25799577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 25799574 - 25799514
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatt 242  Q
    ||||||||||||||  ||||| |||||| |||||||||||||||| |||  |||||||||||    
T  25799574 ttaaataagtaaatgactccc-taaatataccaacatttaattttagtctctttaaaatatt 25799514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 2928144 - 2928096
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||| ||||||||||| |||||||||||  ||| |||||||||||||||    
T  2928144 actagaatcaaatgttggtatatttaggaggaccatttacttatttaac 2928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 421
Target Start/End: Complemental strand, 28725324 - 28725280
Alignment:
Q  377 aaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||| ||||||| ||||||||| || |||||||||||||||||||    
T  28725324 aaattaaatgttggtatatttatggtgactatttacttatttaac 28725280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 28725716 - 28725770
Alignment:
Q  373 actaaaatcaaatgttagtat---atttagggagactatttacttatttaaccct 424  Q
    |||||||||||||||| ||||   |||||||| ||| ||||||||||||||||||    
T  28725716 actaaaatcaaatgttggtattatatttagggggaccatttacttatttaaccct 28725770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 359 - 424
Target Start/End: Complemental strand, 12290044 - 12289979
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    ||||||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12290044 aatattttaggcaggctaaaatcaaatgttggtatatttagggagactatttacttatttaaccct 12289979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 34637616 - 34637685
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    |||||||||||  |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  34637616 aatattttaggggaactaaaatcaaatgttgatatatttagggtgactatttacttatttaaccctaaaa 34637685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 34637475 - 34637425
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  34637475 actaaaatcaaatgttggtatatttatggagactatttacttatttaaccc 34637425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 13340649 - 13340704
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    |||||||||||||||||||||||||| || |||||||| | |||||||||||||||    
T  13340649 actaaaatcaaatgttagtatatttaaggggactattttcatatttaaccctaaaa 13340704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 427
Target Start/End: Complemental strand, 6190637 - 6190565
Alignment:
Q  354 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 427  Q
    |||||||||||| |||| | |||||||||||||||  ||||||||||||||  ||||||||| |||||||||||    
T  6190637 taagaaatatttaaggaga-ctaaaatcaaatgttgatatatttagggagatcatttacttagttaaccctaaa 6190565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 13340493 - 13340445
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  13340493 actaaaatcaaatgttggtatatttaaggggactatttacttatttaac 13340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 31298916 - 31298982
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    ||||||||||   |||||||||||||| || |||||||||  | |||||||||||||||||||||||    
T  31298916 aatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaacccta 31298982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 12290174 - 12290230
Alignment:
Q  372 aactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 429  Q
    ||||||||| ||||||| |||||||||||| ||  |||||||||||||||||||||||    
T  12290174 aactaaaattaaatgttggtatatttaggg-gatcatttacttatttaaccctaaaat 12290230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 422
Target Start/End: Original strand, 7359611 - 7359674
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    |||||||||||   | |||||||||||||| |||||||||||| ||| | ||||||||||||||    
T  7359611 aatattttagggggagtaaaatcaaatgttggtatatttagggcgacgagttacttatttaacc 7359674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 403355 - 403305
Alignment:
Q  375 taaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    |||||| |||| ||||| ||||||| | |||||||||||||||||||||||    
T  403355 taaaattaaatattagtttatttagagggactatttacttatttaacccta 403305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 12289971 - 12290027
Alignment:
Q  169 taaaattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttt 225  Q
    ||||||||||| |||||||||||||| |   ||||||||| |||||||||| |||||    
T  12289971 taaaattaagggttaaataagtaaatagtctccctaaatataccaacatttgatttt 12290027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 12290221 - 12290178
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttt 225  Q
    |||||||||||||| | ||||||||||| ||||||||||||||||    
T  12290221 ttaaataagtaaat-gatcccctaaatataccaacatttaatttt 12290178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 13657741 - 13657806
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    |||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  13657741 aatattttaggaaaactaaaatcaaatgttagtatatttcagaggactatttacttatttaaccct 13657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 297 - 421
Target Start/End: Original strand, 22297891 - 22298016
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| |||||||  ||||||||||||||  ||||||||| ||||||  ||| ||  ||||| |||||||||| |   |||||||||||||||||||||||    
T  22297891 ctcaatgtagagctgagactaatttcataaatgaaaaattttagagggaccaaaaacttaaaaaatattttaaggggactaaaatcaaatgttagtatat 22297990  T
Q  396 ttagggagactatttacttatttaac 421  Q
    |||||| ||| |||||||||||||||    
T  22297991 ttagggggaccatttacttatttaac 22298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 427
Target Start/End: Complemental strand, 6843204 - 6843078
Alignment:
Q  302 tgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaagct-taagaaatattttaggaaaactaaaatcaaatgttagtatatttagg 400  Q
    ||||||| || || ||||||||| |||||||||| ||||||  ||| ||  | |||| |||||| |||||  |||||||||||||||| |||||||||      
T  6843204 tgtagagcagggattaatttcatagatgaaaaattttagagggaccaaaaatctaaggaatattctaggaggactaaaatcaaatgtttgtatatttaaa 6843105  T
Q  401 gagactatttacttatttaaccctaaa 427  Q
    ||||||||||| |||||||||||||||    
T  6843104 gagactatttatttatttaaccctaaa 6843078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 29673356 - 29673285
Alignment:
Q  358 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 429  Q
    |||||||||||||  |||||||||||||||| ||||||||| || ||| |||||||||||||||||| ||||    
T  29673356 aaatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaacccttaaat 29673285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 279 - 428
Target Start/End: Original strand, 2344575 - 2344725
Alignment:
Q  279 atgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaa 377  Q
    ||||||||||| |||| ||||| ||||||| ||||| |||||| |||||| |||||| ||| ||  ||| || |  |||| ||||| ||||   ||||||    
T  2344575 atgaaattagtccatgttctcaatgtagagcagagattaatttaatggataaaaaattttaaagggaccaaaagactaaggaatatgttagaggaactaa 2344674  T
Q  378 aatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    ||| ||||||| || ||||||||  ||||||||||||||||||||| ||||    
T  2344675 aataaaatgttggtctatttaggaggactatttacttatttaacccaaaaa 2344725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 352 - 420
Target Start/End: Original strand, 29673723 - 29673791
Alignment:
Q  352 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 420  Q
    |||||||||||||||||   ||||||||||||||||| ||||||||||||  || ||||||||||||||    
T  29673723 cttaagaaatattttagaggaactaaaatcaaatgtttgtatatttaggggaaccatttacttatttaa 29673791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 304 - 429
Target Start/End: Original strand, 25906094 - 25906219
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 402  Q
    ||||| |||||||||||||||  ||||||||| ||||||  ||| || || |||  ||||||| |||   ||||||||||||||||  ||||||||||      
T  25906094 tagagcagagactaatttcataaatgaaaaat-ttagagggaccaaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggag 25906192  T
Q  403 gactatttacttatttaaccctaaaat 429  Q
    || ||||||||||||||||||||||||    
T  25906193 gattatttacttatttaaccctaaaat 25906219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 17047976 - 17047859
Alignment:
Q  303 gtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggg 401  Q
    |||||| ||||||||| |||||  ||||||||| ||||||  ||| || | ||||  ||||||||||||   |||||||||||| || |||||||||| |    
T  17047976 gtagagcagagactaacttcataaatgaaaaattttagagggaccaaaagtttaaagaatattttaggagggctaaaatcaaatattggtatatttagag 17047877  T
Q  402 agactatttacttattta 419  Q
    ||||||||||| ||||||    
T  17047876 agactatttacatattta 17047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 2846623 - 2846573
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    ||||||||||||||||  ||||||||||| ||| |||||||||||||||||    
T  2846623 actaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 2846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 422
Target Start/End: Complemental strand, 25906085 - 25905959
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| ||||||| || ||||||||| || |||||||||| ||||||  ||| || || || |||||| ||||||   |||||||||||||||| ||||||    
T  25906085 ctcaatgtagagcagggactaattttatagatgaaaaattttagagggaccaaaagcctatgaaatactttagggggactaaaatcaaatgttggtatat 25905986  T
Q  396 ttagggagactatttacttatttaacc 422  Q
     || || ||  ||||||||||||||||    
T  25905985 ataaggggatcatttacttatttaacc 25905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 2846941 - 2847009
Alignment:
Q  357 gaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 426  Q
    |||||||||||  | ||||||||||||||||| || ||| |||| |||| ||||||||||||||||||||    
T  2846941 gaaatattttaaaagaactaaaatcaaatgttggtttatatagg-agaccatttacttatttaaccctaa 2847009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 2858460 - 2858411
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    ||||||||||||||||  ||||||||||| ||| ||||||||||||||||    
T  2858460 actaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 2858778 - 2858846
Alignment:
Q  357 gaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 426  Q
    |||||||||||  | ||||||||||||||||| || ||| |||| |||| ||||||||||||||||||||    
T  2858778 gaaatattttaaaagaactaaaatcaaatgttggtttatatagg-agaccatttacttatttaaccctaa 2858846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 22297812 - 22297764
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    ||||||||||||||||  ||||||||| | |||||||||||||||||||    
T  22297812 actaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 29673801 - 29673725
Alignment:
Q  171 aaattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttctta 247  Q
    |||| |||| |||||||||||||| | ||||||||||| || ||||||| ||||| || | | ||||||||||||||    
T  29673801 aaataaaggtttaaataagtaaatggttcccctaaatatacaaacatttgattttagttcctctaaaatatttctta 29673725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 2847003 - 2846941
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttc 244  Q
    |||||||||||||| | || |||| |||||||||||||| ||||| || |||||||||||||||    
T  2847003 ttaaataagtaaatgg-tctcctatataaaccaacatttgattttagttcttttaaaatatttc 2846941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 2858840 - 2858778
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttc 244  Q
    |||||||||||||| | || |||| |||||||||||||| ||||| || |||||||||||||||    
T  2858840 ttaaataagtaaatgg-tctcctatataaaccaacatttgattttagttcttttaaaatatttc 2858778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Original strand, 15773760 - 15773799
Alignment:
Q  360 atattttaggaaaactaaaatcaaatgttagtatatttag 399  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  15773760 atattttaggaagactaaaatcaattgttagtatatttag 15773799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 20510501 - 20510556
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    ||||||||||||||||  |||||||| |  |||||||||||| |||||||||||||    
T  20510501 actaaaatcaaatgtttatatatttatgaggactatttacttttttaaccctaaaa 20510556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 13657613 - 13657544
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    ||||||||||   ||||||||||||||||| |||||||||  | ||| ||||| |||||||| |||||||    
T  13657613 aatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttatttaatcctaaaa 13657544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 29673287 - 29673356
Alignment:
Q  174 ttaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatattt 243  Q
    |||||| |||||||||||||| |  ||| |||||| |||||||||| ||||| |||||  ||||||||||    
T  29673287 ttaagggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatattt 29673356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 5161109 - 5161161
Alignment:
Q  375 taaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaa 427  Q
    ||||||||||||||| |||||||| | | |  |||||||||||||||||||||    
T  5161109 taaaatcaaatgttaatatatttaagaaaatcatttacttatttaaccctaaa 5161161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 297 - 424
Target Start/End: Original strand, 17047984 - 17048111
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| ||||||| |||||||||||| || |||||||  | |||||| |||| || || ||| |||| |||||||   |||||| ||||||||| ||||||    
T  17047984 ctcaatgtagagcagagactaatttaatagatgaaattttttagaggaaccaaaagcctaaaaaatcttttagggggactaaa-tcaaatgttggtatat 17048082  T
Q  396 ttagggagactatttacttatttaaccct 424  Q
    ||| || ||  ||| ||||||||||||||    
T  17048083 ttaaggggatcattcacttatttaaccct 17048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 424
Target Start/End: Complemental strand, 24490764 - 24490693
Alignment:
Q  352 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    ||||||| |||||||||  | |||||||||||||||| ||||| ||||   ||| ||||||||||||||||||    
T  24490764 cttaagagatattttagagagactaaaatcaaatgttggtata-ttagaaggaccatttacttatttaaccct 24490693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 426
Target Start/End: Original strand, 30749051 - 30749199
Alignment:
Q  279 atgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaa 377  Q
    ||||||||||| |||| ||||| ||||||| || || |||||| ||||||||||||| |||||| ||||  || | ||| |||||||||||   || |||    
T  30749051 atgaaattagtccatgttctcaatgtagagcagggattaattttatggatgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaa 30749150  T
Q  378 aatcaaatgttagtatatttagggagactatttacttatttaaccctaa 426  Q
    |||||||||||  ||||||||||  || ||||||| |||||||||||||    
T  30749151 aatcaaatgttgatatatttaggaggattatttacgtatttaaccctaa 30749199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 426
Target Start/End: Original strand, 30770502 - 30770650
Alignment:
Q  279 atgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaa 377  Q
    ||||||||||| |||| ||||| ||||||| || || |||||| ||||||||||||| |||||| ||||  || | ||| |||||||||||   || |||    
T  30770502 atgaaattagtccatgttctcaatgtagagcagggattaattttatggatgaaaaattttagaggaaccaaaaacataaaaaatattttagaggaattaa 30770601  T
Q  378 aatcaaatgttagtatatttagggagactatttacttatttaaccctaa 426  Q
    |||||||||||  ||||||||||  || ||||||| |||||||||||||    
T  30770602 aatcaaatgttgatatatttaggaggattatttacgtatttaaccctaa 30770650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 23485720 - 23485655
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaattttag 438  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || ||| |||||||    
T  23485720 actaaaatcaaatattaatatatttagggagactatttacttattcaacccaaagatttattttag 23485655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 425
Target Start/End: Original strand, 14760019 - 14760131
Alignment:
Q  313 gactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttac 412  Q
    |||||||||||| |||||||||| |||| | | |  |||| ||| ||||||||||||   | |||||||||||||| ||||||||| || ||  ||||||    
T  14760019 gactaatttcatagatgaaaaattttaggggaccaaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttac 14760118  T
Q  413 ttatttaacccta 425  Q
    |||||||||||||    
T  14760119 ttatttaacccta 14760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 30746837 - 30746773
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    ||||||||| | ||||||||||||||| |||||||||||| || ||| |||||||||||||||||    
T  30746837 aatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaaccc 30746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 30768288 - 30768224
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    ||||||||| | ||||||||||||||| |||||||||||| || ||| |||||||||||||||||    
T  30768288 aatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaaccc 30768224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 13765683 - 13765561
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| |||||||||| ||||||||||||  ||||||||| ||| ||  ||| ||  | |||  ||||||||| |   |||||||||||||||| ||||||    
T  13765683 ctcaatgtagagtagggactaatttcataaatgaaaaatattaaagggaccaaaaacctaaagaatattttatggggactaaaatcaaatgttggtatat 13765584  T
Q  396 ttagggagactatttacttattt 418  Q
    ||||||||| |||||||||||||    
T  13765583 ttagggagattatttacttattt 13765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 30749015 - 30748951
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    |||||||||||   ||||||||||||| || |||||||||||  ||| |||||||||||||||||    
T  30749015 aatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30748951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 30770466 - 30770402
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    |||||||||||   ||||||||||||| || |||||||||||  ||| |||||||||||||||||    
T  30770466 aatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 15393345 - 15393416
Alignment:
Q  358 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaat 429  Q
    ||||||||||||   ||| |||||||||||| |||||||| ||| ||| |||||||||||||| || |||||    
T  15393345 aaatattttagggggactgaaatcaaatgttggtatatttcgggggaccatttacttatttaatccaaaaat 15393416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 16706527 - 16706596
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagt---atatttagggagactatttacttatttaacccta 425  Q
    |||||||||||   |||||||||||||||| ||   |||||||||| |||||||||| ||||||||||||    
T  16706527 aatattttagggggactaaaatcaaatgttggtggtatatttagggggactatttacatatttaacccta 16706596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 30746868 - 30746926
Alignment:
Q  275 atccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaa 333  Q
    ||||||||||||||| | || ||||| ||||||| |  |||||||||||||||||||||    
T  30746868 atccatgaaattagtccctgttctcaatgtagagcatggactaatttcatggatgaaaa 30746926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 30768319 - 30768377
Alignment:
Q  275 atccatgaaattagttcatgctctcattgtagagtagagactaatttcatggatgaaaa 333  Q
    ||||||||||||||| | || ||||| ||||||| |  |||||||||||||||||||||    
T  30768319 atccatgaaattagtccctgttctcaatgtagagcatggactaatttcatggatgaaaa 30768377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 51900178 - 51900116
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    ||||||||| | |||||||||||||||||| | ||||||||   ||| |||||||||||||||    
T  51900178 aatattttaaggaaactaaaatcaaatgttggaatatttagaaggaccatttacttatttaac 51900116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 16706462 - 16706333
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| ||||||  ||||||||||||||| |||||||||| |||||   ||| || || |||  || |||||||    |||||||||||||||| ||||||    
T  16706462 ctcaatgtagaacagagactaatttcatagatgaaaaattttagaaggaccaaaagcctaaagaaaattttagagggactaaaatcaaatgttggtatat 16706363  T
Q  396 ttagggagactatttacttatttaacccta 425  Q
    |||| | || ||||| || |||||||||||    
T  16706362 ttagagggaatattttctcatttaacccta 16706333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 435
Target Start/End: Complemental strand, 20171457 - 20171377
Alignment:
Q  354 taagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaattt 435  Q
    |||||||||||||||    |||||||||||||||| ||||| ||| |||||| ||||||||||| ||| || |||| |||||    
T  20171457 taagaaatattttagagggactaaaatcaaatgttggtata-ttaaggagaccatttacttattcaactcttaaataaattt 20171377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 426
Target Start/End: Original strand, 22679532 - 22679585
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaa 426  Q
    |||||||||||||||| |||||||||||| ||   |||||||||||||| ||||    
T  22679532 actaaaatcaaatgttggtatatttagggggatcgtttacttatttaactctaa 22679585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 39785267 - 39785218
Alignment:
Q  376 aaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    ||||| ||||||| |||| ||||||| |||||||||||||||||| ||||    
T  39785267 aaaattaaatgttggtatttttagggggactatttacttatttaatccta 39785218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 39785219 - 39785268
Alignment:
Q  177 aggattaaataagtaaattgctcccctaaataaaccaacatttaattttt 226  Q
    |||||||||||||||||| |  |||||||| | |||||||||||||||||    
T  39785219 aggattaaataagtaaatagtccccctaaaaataccaacatttaattttt 39785268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 23528254 - 23528302
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||||||| |||||||  |||||||||  ||||||||||||||||||||    
T  23528254 actaaaattaaatgttgatatatttagaaagactatttacttatttaac 23528302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 30746993 - 30746941
Alignment:
Q  202 ctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 254  Q
    ||||||| |||||||||| ||||| |||| || |||||||| |||||||||||    
T  30746993 ctaaatataccaacatttcattttagtcccttcaaaatattccttagattttt 30746941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 30768444 - 30768392
Alignment:
Q  202 ctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 254  Q
    ||||||| |||||||||| ||||| |||| || |||||||| |||||||||||    
T  30768444 ctaaatataccaacatttcattttagtcccttcaaaatattccttagattttt 30768392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 7328503 - 7328558
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7328503 actaaagtcaaatgttagtatatttagggagactatttacttatttaacccaaaaa 7328558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 304 - 420
Target Start/End: Original strand, 981053 - 981169
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaa-gcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 402  Q
    ||||| |||||||||||||||  ||||||||| ||||||  ||| || || |||  |||||||||||  | ||||||||||||||| |||||||||| ||    
T  981053 tagagcagagactaatttcataaatgaaaaattttagagggaccaaaagcctaaagaatattttagggga-ctaaaatcaaatgttggtatatttagaga 981151  T
Q  403 gactatttacttatttaa 420  Q
    ||||||||||||||||||    
T  981152 gactatttacttatttaa 981169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 37897734 - 37897807
Alignment:
Q  349 aagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacc 422  Q
    |||| |||||||||||||||||  |||||||  ||||||| |||||||||| |||||| |||||||||||||||    
T  37897734 aagcctaagaaatattttaggaggactaaaacaaaatgttggtatatttagtgagactttttacttatttaacc 37897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 16192595 - 16192671
Alignment:
Q  349 aagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    |||| |||| ||||||||||| | ||||||||||||||||  |||||||| |  |||||||||||||||||||||||    
T  16192595 aagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttatttaacccta 16192671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 297 - 424
Target Start/End: Complemental strand, 32483773 - 32483645
Alignment:
Q  297 ctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaaaatcaaatgttagtatat 395  Q
    |||| ||||||||||||||| |||||||  ||||||| | |||||| ||||  |||| ||| |||||||||| |  || ||||||||||||| |||||||    
T  32483773 ctcaatgtagagtagagactgatttcataaatgaaaatttttagagaaaccaaaagcctaaaaaatattttatgggaattaaaatcaaatgtcagtatat 32483674  T
Q  396 ttagggagactatttacttatttaaccct 424  Q
    |||  |  | |||||||||||||||||||    
T  32483673 ttaaaggaattatttacttatttaaccct 32483645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 4921371 - 4921429
Alignment:
Q  375 taaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaattaat 433  Q
    ||||||||||||||  ||||||||| ||||||||||| ||||||||||||||| |||||    
T  4921371 taaaatcaaatgttgatatatttagagagactatttatttatttaaccctaaatttaat 4921429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 16127982 - 16127920
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    ||||||||||||  |||||||| ||||||| ||||||||| || |||||||||||||||||||    
T  16127982 aatattttaggaggactaaaattaaatgttggtatatttaaggggactatttacttatttaac 16127920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 424
Target Start/End: Complemental strand, 37897708 - 37897574
Alignment:
Q  291 catgctctcattgtagagtagagactaatttcatggatgaaaaatgttagagcaacc-caagcttaagaaatattttaggaaaactaaaatcaaatgtta 389  Q
    |||| ||||| ||||||| |||||||||||||||||||||||| | ||||||  |||  || | |||| ||||||||||    | ||||||||||||||     
T  37897708 catgttctcaatgtagagcagagactaatttcatggatgaaaatttttagagggaccgaaaacctaaggaatattttagagggagtaaaatcaaatgttg 37897609  T
Q  390 gtatatttagggagactatttacttatttaaccct 424  Q
    || ||||||||  | |||||| |||||||||||||    
T  37897608 gtctatttaggagggctatttccttatttaaccct 37897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 43130353 - 43130405
Alignment:
Q  377 aaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 430  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||||||||    
T  43130353 aaatcaaatgtg-gtatatttagggagaccatttacttatttaaccctaaaatt 43130405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 12874727 - 12874679
Alignment:
Q  376 aaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||    
T  12874727 aaaatcaaatgttggtatatttagggaaaccatttacttatttaaccct 12874679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 425
Target Start/End: Complemental strand, 18509547 - 18509495
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaacccta 425  Q
    |||||||||||||||| |||||||||||| ||| ||||| |||||||||||||    
T  18509547 actaaaatcaaatgttggtatatttagggggaccatttaattatttaacccta 18509495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 27847928 - 27847860
Alignment:
Q  352 cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaa 420  Q
    |||||| ||||||||| |   |||||||||||||||| ||||||||| || ||||||||||||||||||    
T  27847928 cttaaggaatattttaagtggactaaaatcaaatgttggtatatttatggggactatttacttatttaa 27847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 32945662 - 32945607
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    |||||||||||||||| |||||||| ||| |||||||||| |||||||||| ||||    
T  32945662 actaaaatcaaatgttggtatattttgggggactatttacctatttaacccaaaaa 32945607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 12874674 - 12874756
Alignment:
Q  172 aattaaggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttt 254  Q
    |||| ||| |||||||||||||| | | ||||||||| |||||||||| ||||| |||| ||||||||||  |||||| ||||    
T  12874674 aattgagggttaaataagtaaatggtttccctaaatataccaacatttgattttggtccctttaaaatatcccttagactttt 12874756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 25330610 - 25330560
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccc 423  Q
    ||||||||||||||||  | ||||||||| |||||||||||||||||||||    
T  25330610 actaaaatcaaatgttgatgtatttagggggactatttacttatttaaccc 25330560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 39159300 - 39159350
Alignment:
Q  374 ctaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||||||||||    
T  39159300 ctaaaatcaaatgttagtatatttaagaggactattaacttatttaaccct 39159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 12874886 - 12874943
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 430  Q
    ||||||||||||| || |||||||| || |||||||||||||||||||| | ||||||    
T  12874886 actaaaatcaaatattggtatatttgggaagactatttacttatttaacgcaaaaatt 12874943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 412
Target Start/End: Complemental strand, 35926844 - 35926736
Alignment:
Q  304 tagagtagagactaatttcatggatgaaaaatgttagagcaacccaag-cttaagaaatattttaggaaaactaaaatcaaatgttagtatatttaggga 402  Q
    |||||||||||||||||||||  ||||||  | |||||| |||  ||  | ||| |||||||||| | | |||||||||||||||| ||||||||||||     
T  35926844 tagagtagagactaatttcataaatgaaatgttttagaggaactaaaaacctaaaaaatattttatggagactaaaatcaaatgttggtatatttaggg- 35926746  T
Q  403 gactatttac 412  Q
    ||||||||||    
T  35926745 gactatttac 35926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 30714187 - 30714116
Alignment:
Q  358 aaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaatt 430  Q
    |||||||||| ||| ||||||||||||||||  |||||||| || ||| |||||| ||||||||||| |||||    
T  30714187 aaatattttaagaagactaaaatcaaatgttgatatatttaaggggaccatttac-tatttaaccctcaaatt 30714116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 39786366 - 39786311
Alignment:
Q  373 actaaaatcaaatgttagtatatttagggagactatttacttatttaaccctaaaa 428  Q
    |||||||||||||||| |||||||||    || |||||||||||||||||||||||    
T  39786366 actaaaatcaaatgttggtatatttaataggattatttacttatttaaccctaaaa 39786311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 421
Target Start/End: Complemental strand, 16126284 - 16126222
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaac 421  Q
    |||| |||||||  |||||||| ||||||| ||||||||| || |||| ||||||||||||||    
T  16126284 aataatttaggaggactaaaattaaatgttggtatatttaaggggactgtttacttatttaac 16126222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 16127921 - 16127982
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatt 242  Q
    |||||||||||||| |  ||| |||||| |||||||||||||||| |||||  |||||||||    
T  16127921 ttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatatt 16127982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 27847857 - 27847926
Alignment:
Q  178 ggattaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttctta 247  Q
    ||||||||||||||||| |  ||| |||||| |||||||||| ||||| ||||  |||||||||| ||||    
T  27847857 ggattaaataagtaaatagtccccataaatataccaacatttgattttagtccacttaaaatattcctta 27847926  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 40152702 - 40152782
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgttcctc 262  Q
    |||||||||||||| | |||  |||||| || ||||||| ||||| |||||  ||||||||| |||||||||||||| ||||    
T  40152702 ttaaataagtaaatgg-tcctttaaatatacaaacattttattttagtcctcctaaaatattccttagattttttgtccctc 40152782  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 17368879 - 17368927
Alignment:
Q  376 aaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    ||||||||||||| ||||||||| |||||| || |||||||||| ||||    
T  17368879 aaaatcaaatgttggtatatttaaggagaccatatacttatttagccct 17368927  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 25330563 - 25330639
Alignment:
Q  181 ttaaataagtaaattgctcccctaaataaaccaacatttaatttttgtccttttaaaatatttcttagattttttgt 257  Q
    |||||||||||||| |  |||||||||| | |||||||| ||||| |||| | |||||| ||  |||||||||||||    
T  25330563 ttaaataagtaaatagtccccctaaatacatcaacatttgattttagtccctctaaaattttctttagattttttgt 25330639  T

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Target: scaffold0025 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 64017 - 64082
Alignment:
Q  359 aatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    |||||||||||  ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  64017 aatattttaggggaactaaaattaaatgttggtatatttagggagactatttactgatttaaccct 64082  T

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Target: scaffold0042 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 30421 - 30310
Alignment:
Q  313 gactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagactatttac 412  Q
    |||||||||||| |||||||  | |||||| | |  ||||||||| ||||||||  | | |||||||||||||||||||||||||| || ||| ||| ||    
T  30421 gactaatttcattgatgaaattttttagaggaccaaaagcttaagtaatatttttaggagactaaaatcaaatgttagtatatttatggggaccattcac 30322  T
Q  413 ttatttaaccct 424  Q
    ||||||||||||    
T  30321 ttatttaaccct 30310  T

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Target: scaffold0042; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 30697 - 30802
Alignment:
Q  307 agtagagactaatttcatggatgaaaaatgttagagcaacccaagcttaagaaatattttaggaaaactaaaatcaaatgttagtatatttagggagact 406  Q
    ||||| ||||||||| ||||||||||| | |||||| | |  || |||||  ||||||||  | | ||||||||||||||||| |||||||| |||||||    
T  30697 agtagggactaatttgatggatgaaaatttttagaggaccaaaaacttaaataatatttttaggagactaaaatcaaatgttattatatttaaggagact 30796  T
Q  407 atttac 412  Q
    ||||||    
T  30797 atttac 30802  T

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Target: scaffold0328 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 424
Target Start/End: Complemental strand, 11060 - 11009
Alignment:
Q  372 aactaaaatcaaatgttagtatatttagggagactatttacttatttaaccct 424  Q
    |||||||||||| |||||||||||||| | | |||||||||||||||||||||    
T  11060 aactaaaatcaactgttagtatattta-gaatactatttacttatttaaccct 11009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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