View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3477_high_2 (Length: 441)
Name: NF3477_high_2
Description: NF3477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3477_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 36097846 - 36097456
Alignment:
| Q |
1 |
ctccctttatcgaaacctttgctatgatgccaattattgggaaaatcatcgatatgaaatctctaaacaaatggaaccacaaccataaaagaagtaaaag |
100 |
Q |
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| T |
36097846 |
ctccctttatcgaaacctttgctatgatgccaattattgggaaaatcatcaatatgaaatctctaaacaaatggaaccacaaccataaaagaagtaaaag |
36097747 |
T |
|
| Q |
101 |
agaaagnnnnnnnnncataagattgtgattcgacacttcatacctacatccacaatctctcaacaaaatactcattagtaagcctacaatttttacaaga |
200 |
Q |
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| T |
36097746 |
tgaaa----aaaaaacataagattgtggttcgacatttcatacctacatccacaatctctcaacaaaataccgattagtaagcctacaatttttacaaga |
36097651 |
T |
|
| Q |
201 |
gaaaattgcaaaccctctcatacaannnnnnnnggacaaattgcaaattctctcgactctttttgcaatagcaatttttataaggacaaaattgcaagcc |
300 |
Q |
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| T |
36097650 |
gaaaattgcaaaccctctcatacaattttttt-ggacaaattgcaaattctctcgatt-ttttcgcaattgcaatttttataaggacaaaattgcaagcc |
36097553 |
T |
|
| Q |
301 |
tctcaatcatgattttcatggggaaaaattacaaactctcttatgagacacaaatccaatccccaagtacaccnnnnnnnctagagatgttggattg |
397 |
Q |
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| T |
36097552 |
tctcaatcatgattttcatggggaaaaattacaaactctcttatgagacacaaatccaatccccaagtacaccaaaaaaactagagatgttggattg |
36097456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 6853194 - 6853304
Alignment:
| Q |
116 |
cataagattgtgattcgacacttcatacctacatccacaatctctcaacaaaa-tactcattagtaagcctacaatttttacaagagaaaattgcaaacc |
214 |
Q |
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| T |
6853194 |
cataagattgtggtttgacaatttatacttacatccacaatctctcaacaaaaatatttattactcaaactacaatttttaccgtagaaaattgtaaacc |
6853293 |
T |
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| Q |
215 |
ctctcatacaa |
225 |
Q |
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| T |
6853294 |
ctctcatacaa |
6853304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 44683283 - 44683330
Alignment:
| Q |
123 |
ttgtgattcgacacttcatacctacatccacaatctctcaacaaaata |
170 |
Q |
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| T |
44683283 |
ttgtgattcaacacttcatacctacatctacaatctctcaacaaaata |
44683330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 25287872 - 25287831
Alignment:
| Q |
119 |
aagattgtgattcgacacttcatacctacatccacaatctct |
160 |
Q |
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| T |
25287872 |
aagattgtggttcgacacttcatacctacattcacaatctct |
25287831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 5828727 - 5828678
Alignment:
| Q |
119 |
aagattgtgattcgacacttcatacctacatccacaatctctcaacaaaa |
168 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||| ||||||| |
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| T |
5828727 |
aagattgtggttcggcacttcatacctacatccacaatctcttaacaaaa |
5828678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 43401791 - 43401823
Alignment:
| Q |
190 |
tttttacaagagaaaattgcaaaccctctcata |
222 |
Q |
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| T |
43401791 |
tttttacaagagaaaattacaaaccctctcata |
43401823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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