View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3477_high_3 (Length: 319)
Name: NF3477_high_3
Description: NF3477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3477_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 49676316 - 49676606
Alignment:
| Q |
19 |
atatactacattatttgatacttctctatgttcattctcttgtaagtaattgggttatgatgatttatgnnnnnnnntaagaaaattcagggtaatcata |
118 |
Q |
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| T |
49676316 |
atatactacattatttgatacttctctatgttcattctcttgtaagtaattgggttatgatgatttatgaaaaaaaataagaaaattcagtgtaatcata |
49676415 |
T |
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| Q |
119 |
tagtattatttatacttta-gagtttatcttattactatagtacataattaagagattttttatcatatcaaaagggaataaaattagcatggtggtccg |
217 |
Q |
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| T |
49676416 |
tagtattatttatactttaagagtttatcttattcctatagtacatacttaagagattttttatcatatcaaaagggaataaaattagcatggtggtccg |
49676515 |
T |
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| Q |
218 |
attgacagagtagcaagaaacaacgagttacctgagcaccgttcaacatttgcgatttgcgaagaaagcaaagtggtggctactgatgatg |
308 |
Q |
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| T |
49676516 |
attgacagagtagcaagaaacaacgagttacctgagcaccgttcaacatttgcgatttgcgaagaaagcaaagtggcggctactgatgatg |
49676606 |
T |
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