View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3477_low_4 (Length: 273)

Name: NF3477_low_4
Description: NF3477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3477_low_4
NF3477_low_4
[»] chr3 (9 HSPs)
chr3 (18-256)||(38027473-38027711)
chr3 (24-256)||(38032300-38032532)
chr3 (24-256)||(38038565-38038797)
chr3 (45-256)||(38035073-38035286)
chr3 (62-241)||(50913529-50913706)
chr3 (106-241)||(38041973-38042108)
chr3 (106-248)||(50906797-50906939)
chr3 (144-241)||(55082716-55082812)
chr3 (106-178)||(55086775-55086847)
[»] chr8 (1 HSPs)
chr8 (24-256)||(21608275-21608507)
[»] chr4 (6 HSPs)
chr4 (134-256)||(27414304-27414426)
chr4 (134-259)||(27424514-27424639)
chr4 (139-241)||(27419076-27419178)
chr4 (139-241)||(27571656-27571758)
chr4 (134-255)||(27567274-27567395)
chr4 (124-165)||(27487092-27487133)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 38027711 - 38027473
Alignment:
Q  18 tatcttaactggtcaatcctactatcctatgttatcatccatatctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatat 117  Q
    ||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38027711 tatctcaactggtcaatcctactatcctatgttatcattcctatctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatat 38027612  T
Q  118 aaaaacatgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38027611 aaaaacatgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggct 38027512  T
Q  218 cattcaaaaatgatactggaatcataaaccttctcattt 256  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  38027511 cattcaagaatgatacgggaatcataaaccttctcattt 38027473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 38032532 - 38032300
Alignment:
Q  24 aactggtcaatcctactatcctatgttatcatccatatctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatataaaaac 123  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  38032532 aactggtcaatcctactctcctatgttatcatccatatctatgttatcattcatacaaattagttatagcctgttcaagacagaagttgtatgtaagaac 38032433  T
Q  124 atgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattca 223  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38032432 atgtcttctttgcagggaattgtaagaccgcccattggatgacaataaccgaattcctcttcagattggctaagcaattcttgaaataaaggctcattca 38032333  T
Q  224 aaaatgatactggaatcataaaccttctcattt 256  Q
    | |||||||||||||||||||||||||||||||    
T  38032332 agaatgatactggaatcataaaccttctcattt 38032300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 38038797 - 38038565
Alignment:
Q  24 aactggtcaatcctactatcctatgttatcatccatatctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatataaaaac 123  Q
    ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||| |||    
T  38038797 aactggtcaatcctactctcctatgttatcattcctatctatgttatcaatcatacaaatttgttatatcctgttcaagacagaagctgtatgtaagaac 38038698  T
Q  124 atgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattca 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  38038697 atgtcttccttgcagggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattca 38038598  T
Q  224 aaaatgatactggaatcataaaccttctcattt 256  Q
    | ||||||| ||||||||| |||||||||||||    
T  38038597 agaatgatattggaatcatgaaccttctcattt 38038565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 45 - 256
Target Start/End: Complemental strand, 38035286 - 38035073
Alignment:
Q  45 tatgttatcatccatat--ctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatataaaaacatgtcttccttgcagggaa 142  Q
    ||||||||||| |||||  |||||||| || ||||   ||||| |||||| | |||||||| ||||| ||||| ||| || | |||||||||||||||||    
T  38035286 tatgttatcattcatatgactatgttagcattcatgtgaattaattatagaccgttcaagagagaagctgtatgtaagaatacgtcttccttgcagggaa 38035187  T
Q  143 ttgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatactggaatcat 242  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||    
T  38035186 ttgtgagaccacccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatcat 38035087  T
Q  243 aaaccttctcattt 256  Q
     ||||||| |||||    
T  38035086 gaaccttcgcattt 38035073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 50913706 - 50913529
Alignment:
Q  62 ctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatataaaaacatgtcttccttgcagggaattgtaagaccacccattgg 161  Q
    ||||||||||| |||||||  | | |||||| |||||||||  ||||| ||||| ||| || |  |||||||||||||||||||||||||||||||||||    
T  50913706 ctatgttatcactcataca--tgaattatagtctgttcaagtgagaagctgtatgtaagaagacatcttccttgcagggaattgtaagaccacccattgg 50913609  T
Q  162 atgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatactggaatca 241  Q
    |||||| || || ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||    
T  50913608 atgacagtagccaaattcctcttcagcttggctaagcaattcttgaaataaaggctcattcaagaatgatattggaatca 50913529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 38042108 - 38041973
Alignment:
Q  106 gaagttgtatataaaaacatgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattctt 205  Q
    |||||||||  ||||||||  ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| |  |||||||    
T  38042108 gaagttgtacgtaaaaacacatcttccttgcacggaattgtaagaccacccatttgatgacagtaaccgaattcctcttcagcttggctcaacaattctt 38042009  T
Q  206 gaaataaaggctcattcaaaaatgatactggaatca 241  Q
    |||| |||||||||||||| |||| |||||||||||    
T  38042008 gaaacaaaggctcattcaagaatgctactggaatca 38041973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 248
Target Start/End: Original strand, 50906797 - 50906939
Alignment:
Q  106 gaagttgtatataaaaacatgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattctt 205  Q
    |||||||||| ||||||||  ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||| | ||| |  |  |||||||    
T  50906797 gaagttgtatgtaaaaacacatcttccttgcacggaattgtaagaccacccattggatgacagtaacggaattcctcttcggcttgacgcaacaattctt 50906896  T
Q  206 gaaataaaggctcattcaaaaatgatactggaatcataaacct 248  Q
    ||||| ||||||||||||| ||||| |||||||||| ||||||    
T  50906897 gaaatgaaggctcattcaagaatgacactggaatcaaaaacct 50906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 55082716 - 55082812
Alignment:
Q  144 tgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatactggaatca 241  Q
    ||||||||||||||| |||||||| ||||| || |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55082716 tgtaagaccacccat-ggatgacagtaaccaaactcctcttctgcttggctaagcaattcttgaaataaaggctcattcaaaaatgatactggaatca 55082812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 55086847 - 55086775
Alignment:
Q  106 gaagttgtatataaaaacatgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaatt 178  Q
    |||||||||| |||||| |  ||||| ||||||  ||||||||||||||||||||||||||| |||| |||||    
T  55086847 gaagttgtatgtaaaaatacatcttctttgcagctaattgtaagaccacccattggatgacagtaactgaatt 55086775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 24 - 256
Target Start/End: Complemental strand, 21608507 - 21608275
Alignment:
Q  24 aactggtcaatcctactatcctatgttatcatccatatctatgttatcaatcatacaaattagttatagcctgttcaagacagaagttgtatataaaaac 123  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||| |||    
T  21608507 aactggtcaatcctactctcctatgttatcatccctatctatgttatcaatcatacaaatttgttatatcctgttcaagacagaagctgtatgtaagaac 21608408  T
Q  124 atgtcttccttgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattca 223  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  21608407 atgtcttccttgcagggaattgtaagacctcccattggatgacaataaccgaattcctcttcagcttggctaagcaattcttgaaataaaggctcattca 21608308  T
Q  224 aaaatgatactggaatcataaaccttctcattt 256  Q
    | ||||||| ||||||||| |||||||||||||    
T  21608307 agaatgatattggaatcatgaaccttctcattt 21608275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 256
Target Start/End: Original strand, 27414304 - 27414426
Alignment:
Q  134 tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatac 233  Q
    |||| |||||||||||||||||||||||||||  ||| || ||||| ||||| |||||  | ||||||||||||||| | || |  |||||  |||||||    
T  27414304 tgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagtatgatac 27414403  T
Q  234 tggaatcataaaccttctcattt 256  Q
     ||||||| ||||| ||||||||    
T  27414404 aggaatcacaaaccgtctcattt 27414426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 27424514 - 27424639
Alignment:
Q  134 tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatac 233  Q
    |||| ||||| |||||||||||||||||||||  ||| ||  |||| |||||||||||  | || |||||||||||| |||| |  |||||  |||||||    
T  27424514 tgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgatac 27424613  T
Q  234 tggaatcataaaccttctcatttgat 259  Q
    |||||||| |||||  ||||||||||    
T  27424614 tggaatcacaaaccgcctcatttgat 27424639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 27419076 - 27419178
Alignment:
Q  139 ggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatactggaa 238  Q
    |||||||||||||||||||||||||||  ||| || ||||| ||||| |||||  | ||||||||||||||  | ||||   ||||| ||||||||||||    
T  27419076 ggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaa 27419175  T
Q  239 tca 241  Q
    |||    
T  27419176 tca 27419178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 27571758 - 27571656
Alignment:
Q  139 ggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatactggaa 238  Q
    |||||||| ||||||||||||||||||  ||| || ||||| ||||| |||||  | ||||||||||||||  | ||||   ||||| ||||||||||||    
T  27571758 ggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatactggaa 27571659  T
Q  239 tca 241  Q
    |||    
T  27571658 tca 27571656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 27567395 - 27567274
Alignment:
Q  134 tgcagggaattgtaagaccacccattggatgacaataaccgaattcctcttcagattggctaagtaattcttgaaataaaggctcattcaaaaatgatac 233  Q
    |||| |||||||| ||||||||||||||||||  |||||| ||||| ||||| | |||  | ||||||||||||||  | || |  |||||  |||||||    
T  27567395 tgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaagtatgatac 27567296  T
Q  234 tggaatcataaaccttctcatt 255  Q
    ||||||||  |||| |||||||    
T  27567295 tggaatcacgaaccgtctcatt 27567274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 27487133 - 27487092
Alignment:
Q  124 atgtcttccttgcagggaattgtaagaccacccattggatga 165  Q
    |||||||| ||||| ||||| |||||||||||||||||||||    
T  27487133 atgtcttctttgcaaggaatagtaagaccacccattggatga 27487092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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